Atomistry » Chlorine » PDB 1eyz-1g0g » 1fwx
Atomistry »
  Chlorine »
    PDB 1eyz-1g0g »
      1fwx »

Chlorine in PDB 1fwx: Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans

Enzymatic activity of Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans

All present enzymatic activity of Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans:
1.7.99.6;

Protein crystallography data

The structure of Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans, PDB code: 1fwx was solved by K.Brown, K.Djinovic-Carugo, T.Haltia, I.Cabrito, M.Saraste, J.J.Moura, I.Moura, M.Tegoni, C.Cambillau, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.83 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 102.595, 105.090, 116.696, 90.00, 110.69, 90.00
R / Rfree (%) 24.1 / 26.4

Other elements in 1fwx:

The structure of Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans also contains other interesting chemical elements:

Copper (Cu) 24 atoms
Calcium (Ca) 11 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans (pdb code 1fwx). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans, PDB code: 1fwx:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 1fwx

Go back to Chlorine Binding Sites List in 1fwx
Chlorine binding site 1 out of 4 in the Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl4901

b:17.6
occ:1.00
 O A:HOH5031 3.0 21.9 1.0
ND1 A:HIS325 3.1 19.4 1.0
NH1 A:ARG131 3.3 18.0 1.0
CE1 A:HIS325 3.4 19.8 1.0
ND2 A:ASN273 3.4 18.0 1.0
NH2 A:ARG131 3.4 18.0 1.0
N A:CYS272 3.4 20.2 1.0
CB A:ASN189 3.6 17.8 1.0
CG A:ASN189 3.7 18.0 1.0
CA A:GLY271 3.7 20.6 1.0
CZ A:ARG131 3.8 17.6 1.0
O A:HOH5001 3.9 22.3 1.0
OD1 A:ASN189 3.9 18.6 1.0
O A:CYS272 4.0 19.4 1.0
OD1 A:ASN273 4.1 17.9 1.0
CG A:ASN273 4.1 18.4 1.0
C A:GLY271 4.1 20.3 1.0
ND2 A:ASN189 4.1 17.9 1.0
CE1 A:HIS376 4.2 19.3 1.0
C A:CYS272 4.3 19.7 1.0
CA A:CYS272 4.4 20.0 1.0
CG A:HIS325 4.4 19.5 1.0
ND1 A:HIS376 4.7 19.0 1.0
O A:HOH4971 4.7 16.6 1.0
NE2 A:HIS325 4.7 19.8 1.0
O A:HIS270 4.8 21.0 1.0
N A:GLY271 4.9 20.9 1.0
CB A:CYS272 4.9 20.3 1.0

Chlorine binding site 2 out of 4 in 1fwx

Go back to Chlorine Binding Sites List in 1fwx
Chlorine binding site 2 out of 4 in the Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl4906

b:12.7
occ:1.00
 O B:HOH5847 2.9 14.8 1.0
NH1 B:ARG131 3.1 12.9 1.0
ND1 B:HIS325 3.3 13.2 1.0
N B:CYS272 3.3 13.3 1.0
ND2 B:ASN273 3.4 12.8 1.0
NH2 B:ARG131 3.5 12.5 1.0
CE1 B:HIS325 3.6 13.9 1.0
CB B:ASN189 3.7 13.8 1.0
CA B:GLY271 3.7 13.6 1.0
CG B:ASN189 3.7 14.2 1.0
CZ B:ARG131 3.8 12.8 1.0
O B:CYS272 3.9 13.0 1.0
OD1 B:ASN189 3.9 14.9 1.0
OD1 B:ASN273 4.0 13.4 1.0
CG B:ASN273 4.0 13.1 1.0
O B:HOH5979 4.0 18.7 1.0
C B:GLY271 4.0 13.4 1.0
C B:CYS272 4.2 13.2 1.0
CE1 B:HIS376 4.2 14.7 1.0
ND2 B:ASN189 4.3 13.8 1.0
CA B:CYS272 4.4 13.4 1.0
CG B:HIS325 4.6 13.2 1.0
ND1 B:HIS376 4.7 14.3 1.0
O B:HOH5820 4.7 11.9 1.0
CB B:CYS272 4.8 13.4 1.0
N B:GLY271 4.8 13.9 1.0
O B:HIS270 4.9 13.9 1.0
NE2 B:HIS325 4.9 13.8 1.0
N B:ASN273 4.9 12.9 1.0

Chlorine binding site 3 out of 4 in 1fwx

Go back to Chlorine Binding Sites List in 1fwx
Chlorine binding site 3 out of 4 in the Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl4907

b:18.9
occ:1.00
 O C:HOH6955 3.1 27.1 1.0
NH1 C:ARG131 3.2 18.9 1.0
ND1 C:HIS325 3.3 21.8 1.0
N C:CYS272 3.4 20.7 1.0
ND2 C:ASN273 3.4 21.3 1.0
CE1 C:HIS325 3.5 22.0 1.0
NH2 C:ARG131 3.6 18.8 1.0
CB C:ASN189 3.6 19.1 1.0
CA C:GLY271 3.7 21.0 1.0
CG C:ASN189 3.7 19.3 1.0
CZ C:ARG131 3.9 18.6 1.0
O C:HOH6868 4.0 20.3 1.0
OD1 C:ASN189 4.0 19.8 1.0
CG C:ASN273 4.1 21.1 1.0
OD1 C:ASN273 4.1 21.1 1.0
C C:GLY271 4.1 20.9 1.0
O C:CYS272 4.1 20.6 1.0
ND2 C:ASN189 4.1 19.4 1.0
C C:CYS272 4.3 20.8 1.0
CE1 C:HIS376 4.3 21.4 1.0
CA C:CYS272 4.4 20.7 1.0
CG C:HIS325 4.6 21.7 1.0
O C:HOH7324 4.7 72.0 1.0
ND1 C:HIS376 4.7 21.2 1.0
O C:HOH6832 4.8 19.2 1.0
NE2 C:HIS325 4.8 21.9 1.0
N C:GLY271 4.8 21.2 1.0
CB C:CYS272 4.9 20.7 1.0
O C:HIS270 4.9 21.2 1.0
N C:ASN273 4.9 20.9 1.0

Chlorine binding site 4 out of 4 in 1fwx

Go back to Chlorine Binding Sites List in 1fwx
Chlorine binding site 4 out of 4 in the Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl4908

b:32.9
occ:1.00
 O D:HOH7996 2.5 66.4 1.0
O D:HOH8034 2.8 36.0 1.0
NH2 D:ARG131 3.2 32.0 0.9
ND1 D:HIS325 3.2 32.6 0.5
O D:HOH7947 3.3 90.1 1.0
NH1 D:ARG131 3.3 32.0 0.4
CE1 D:HIS325 3.5 32.6 1.0
ND2 D:ASN273 3.5 33.7 1.2
N D:CYS272 3.6 34.0 0.8
CZ D:ARG131 3.7 32.0 1.3
CG D:ASN189 3.9 31.9 1.0
CB D:ASN189 4.0 32.0 1.3
CA D:GLY271 4.0 34.1 0.7
O D:HOH8010 4.1 35.1 1.0
OD1 D:ASN189 4.1 31.8 0.6
O D:CYS272 4.1 34.0 1.2
CE1 D:HIS376 4.1 32.1 1.0
CG D:ASN273 4.2 33.8 0.6
OD1 D:ASN273 4.2 33.7 1.2
ND2 D:ASN189 4.2 31.8 0.5
C D:GLY271 4.3 34.0 1.1
C D:CYS272 4.3 34.0 1.0
CG D:HIS325 4.4 32.5 1.2
CA D:CYS272 4.5 34.0 1.0
O D:HOH8159 4.6 30.8 1.0
ND1 D:HIS376 4.6 32.0 1.0
NE2 D:HIS325 4.7 32.5 1.0
O D:HOH8103 4.8 47.0 1.0
CB D:CYS272 4.9 34.0 0.7

Reference:

K.Brown, K.Djinovic-Carugo, T.Haltia, I.Cabrito, M.Saraste, J.J.Moura, I.Moura, M.Tegoni, C.Cambillau. Revisiting the Catalytic Cuz Cluster of Nitrous Oxide (N2O) Reductase. Evidence of A Bridging Inorganic Sulfur J.Biol.Chem. V. 275 41133 2000.
ISSN: ISSN 0021-9258
PubMed: 11024061
DOI: 10.1074/JBC.M008617200
Page generated: Fri Jul 19 22:01:27 2024

Last articles

Ca in 2WD6
Ca in 2WCA
Ca in 2W49
Ca in 2WC4
Ca in 2WBX
Ca in 2WBW
Ca in 2WBF
Ca in 2W95
Ca in 2W9D
Ca in 2W94
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy