Chlorine in PDB 1g7a: 1.2 A Structure of T3R3 Human Insulin at 100 K
Protein crystallography data
The structure of 1.2 A Structure of T3R3 Human Insulin at 100 K, PDB code: 1g7a
was solved by
G.D.Smith,
W.A.Pangborn,
R.H.Blessing,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
31.20 /
1.20
|
Space group
|
H 3
|
Cell size a, b, c (Å), α, β, γ (°)
|
80.127,
80.127,
71.582,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
16.9 /
19.3
|
Other elements in 1g7a:
The structure of 1.2 A Structure of T3R3 Human Insulin at 100 K also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the 1.2 A Structure of T3R3 Human Insulin at 100 K
(pdb code 1g7a). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the
1.2 A Structure of T3R3 Human Insulin at 100 K, PDB code: 1g7a:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
Chlorine binding site 1 out
of 7 in 1g7a
Go back to
Chlorine Binding Sites List in 1g7a
Chlorine binding site 1 out
of 7 in the 1.2 A Structure of T3R3 Human Insulin at 100 K
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of 1.2 A Structure of T3R3 Human Insulin at 100 K within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl902
b:18.7
occ:0.33
|
ZN
|
B:ZN901
|
2.2
|
10.8
|
0.3
|
NE2
|
B:HIS10
|
3.5
|
11.5
|
1.0
|
HD2
|
B:HIS10
|
3.6
|
13.7
|
1.0
|
CD2
|
B:HIS10
|
3.9
|
10.7
|
1.0
|
O
|
B:HOH1312
|
4.4
|
40.5
|
1.0
|
CE1
|
B:HIS10
|
4.7
|
11.7
|
1.0
|
O
|
B:HOH1271
|
4.8
|
38.7
|
1.0
|
|
Chlorine binding site 2 out
of 7 in 1g7a
Go back to
Chlorine Binding Sites List in 1g7a
Chlorine binding site 2 out
of 7 in the 1.2 A Structure of T3R3 Human Insulin at 100 K
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of 1.2 A Structure of T3R3 Human Insulin at 100 K within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl912
b:10.9
occ:0.45
|
O
|
D:HOH1814
|
1.4
|
9.2
|
0.6
|
ZN
|
D:ZN911
|
2.2
|
9.2
|
0.5
|
HB3
|
D:LEU6
|
2.7
|
12.3
|
1.0
|
HD13
|
D:LEU6
|
2.8
|
15.9
|
1.0
|
NE2
|
D:HIS10
|
3.5
|
8.5
|
0.5
|
CD1
|
D:LEU6
|
3.6
|
14.1
|
1.0
|
O
|
D:HOH1812
|
3.6
|
12.1
|
0.6
|
HD12
|
D:LEU6
|
3.6
|
14.3
|
1.0
|
HD2
|
D:HIS10
|
3.7
|
11.2
|
0.5
|
CB
|
D:LEU6
|
3.7
|
10.8
|
1.0
|
HD22
|
D:LEU6
|
3.9
|
15.1
|
1.0
|
CD2
|
D:HIS10
|
3.9
|
9.8
|
0.5
|
CG
|
D:LEU6
|
4.1
|
11.6
|
1.0
|
HB2
|
D:LEU6
|
4.1
|
12.0
|
1.0
|
O
|
D:HOH1150
|
4.2
|
23.2
|
0.3
|
CD2
|
D:LEU6
|
4.4
|
13.7
|
1.0
|
HD11
|
D:LEU6
|
4.5
|
15.1
|
1.0
|
HD21
|
D:LEU6
|
4.6
|
14.2
|
1.0
|
CE1
|
D:HIS10
|
4.6
|
11.8
|
0.5
|
CA
|
D:LEU6
|
4.8
|
9.6
|
1.0
|
O
|
D:LEU6
|
4.8
|
10.2
|
1.0
|
HE1
|
D:HIS10
|
4.9
|
14.3
|
0.5
|
C
|
D:LEU6
|
4.9
|
9.0
|
1.0
|
HA
|
D:LEU6
|
5.0
|
9.0
|
1.0
|
|
Chlorine binding site 3 out
of 7 in 1g7a
Go back to
Chlorine Binding Sites List in 1g7a
Chlorine binding site 3 out
of 7 in the 1.2 A Structure of T3R3 Human Insulin at 100 K
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of 1.2 A Structure of T3R3 Human Insulin at 100 K within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl922
b:10.6
occ:0.55
|
ZN
|
D:ZN921
|
2.3
|
9.6
|
0.6
|
HD2
|
D:HIS10
|
3.0
|
12.8
|
0.6
|
HD22
|
D:LEU11
|
3.1
|
15.2
|
1.0
|
HD11
|
C:LEU16
|
3.1
|
14.6
|
1.0
|
O
|
C:HOH1138
|
3.3
|
20.7
|
1.0
|
O
|
C:HOH1114
|
3.3
|
14.9
|
1.0
|
NE2
|
D:HIS10
|
3.4
|
7.8
|
0.6
|
HD21
|
C:LEU16
|
3.5
|
15.2
|
1.0
|
CD2
|
D:HIS10
|
3.5
|
7.0
|
0.6
|
HB3
|
D:ALA14
|
3.7
|
10.7
|
1.0
|
CL
|
D:CL923
|
3.8
|
12.8
|
0.6
|
HB2
|
D:ALA14
|
3.9
|
9.8
|
1.0
|
HB1
|
D:ALA14
|
4.0
|
7.9
|
1.0
|
CD2
|
D:LEU11
|
4.1
|
13.4
|
1.0
|
CB
|
D:ALA14
|
4.1
|
9.3
|
1.0
|
CD1
|
C:LEU16
|
4.1
|
12.4
|
1.0
|
HA
|
D:LEU11
|
4.2
|
6.4
|
1.0
|
HD13
|
C:LEU16
|
4.3
|
13.8
|
1.0
|
H
|
C:CYS11
|
4.3
|
17.6
|
1.0
|
HD21
|
D:LEU11
|
4.4
|
13.6
|
1.0
|
HD23
|
D:LEU11
|
4.4
|
14.5
|
1.0
|
HG21
|
C:ILE10
|
4.4
|
20.9
|
1.0
|
O
|
C:HOH1935
|
4.4
|
14.0
|
0.3
|
HG23
|
C:ILE10
|
4.5
|
19.6
|
1.0
|
CD2
|
C:LEU16
|
4.5
|
14.5
|
1.0
|
O
|
C:CYS11
|
4.5
|
16.5
|
1.0
|
HB2
|
C:CYS11
|
4.5
|
17.2
|
1.0
|
CE1
|
D:HIS10
|
4.7
|
9.3
|
0.6
|
HD22
|
C:LEU16
|
4.7
|
16.7
|
1.0
|
CG
|
C:LEU16
|
4.8
|
11.8
|
1.0
|
HD12
|
C:LEU16
|
4.9
|
14.4
|
1.0
|
CG
|
D:HIS10
|
4.9
|
7.4
|
0.6
|
HB3
|
C:CYS6
|
4.9
|
13.5
|
1.0
|
HG
|
C:LEU16
|
5.0
|
15.2
|
1.0
|
CG2
|
C:ILE10
|
5.0
|
23.3
|
1.0
|
HB3
|
D:HIS10
|
5.0
|
9.7
|
0.5
|
|
Chlorine binding site 4 out
of 7 in 1g7a
Go back to
Chlorine Binding Sites List in 1g7a
Chlorine binding site 4 out
of 7 in the 1.2 A Structure of T3R3 Human Insulin at 100 K
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of 1.2 A Structure of T3R3 Human Insulin at 100 K within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl923
b:12.8
occ:0.55
|
ZN
|
D:ZN921
|
2.2
|
9.6
|
0.6
|
NE2
|
D:HIS10
|
3.4
|
7.8
|
0.6
|
HE1
|
D:HIS10
|
3.5
|
10.8
|
0.6
|
O
|
C:HOH1138
|
3.7
|
20.7
|
1.0
|
CL
|
D:CL922
|
3.8
|
10.6
|
0.6
|
CE1
|
D:HIS10
|
3.8
|
9.3
|
0.6
|
HB3
|
D:ALA14
|
4.1
|
10.7
|
1.0
|
O
|
D:HOH1179
|
4.4
|
27.6
|
1.0
|
HB2
|
D:ALA14
|
4.5
|
9.8
|
1.0
|
CD2
|
D:HIS10
|
4.7
|
7.0
|
0.6
|
CB
|
D:ALA14
|
4.9
|
9.3
|
1.0
|
|
Chlorine binding site 5 out
of 7 in 1g7a
Go back to
Chlorine Binding Sites List in 1g7a
Chlorine binding site 5 out
of 7 in the 1.2 A Structure of T3R3 Human Insulin at 100 K
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of 1.2 A Structure of T3R3 Human Insulin at 100 K within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl1101
b:16.2
occ:1.00
|
H
|
F:LYS29
|
2.3
|
16.4
|
1.0
|
H
|
E:GLU4
|
2.5
|
14.7
|
1.0
|
H
|
E:VAL3
|
2.6
|
10.9
|
1.0
|
HB
|
E:VAL3
|
2.7
|
14.0
|
1.0
|
HA3
|
E:GLY1
|
2.7
|
12.4
|
1.0
|
H1
|
E:GLY1
|
2.7
|
16.3
|
1.0
|
H
|
F:THR30
|
2.9
|
23.6
|
1.0
|
OG1
|
F:THR30
|
3.0
|
26.4
|
1.0
|
HB2
|
F:LYS29
|
3.2
|
19.8
|
1.0
|
N
|
F:LYS29
|
3.2
|
14.6
|
1.0
|
CA
|
E:GLY1
|
3.2
|
13.6
|
1.0
|
C
|
E:GLY1
|
3.3
|
12.4
|
1.0
|
N
|
E:VAL3
|
3.3
|
10.4
|
1.0
|
N
|
E:GLY1
|
3.4
|
15.8
|
1.0
|
N
|
E:GLU4
|
3.4
|
11.6
|
1.0
|
N
|
F:THR30
|
3.4
|
21.3
|
1.0
|
HG23
|
F:THR30
|
3.4
|
24.3
|
1.0
|
HG1
|
F:THR30
|
3.5
|
25.3
|
1.0
|
HA
|
F:PRO28
|
3.5
|
15.2
|
1.0
|
CB
|
E:VAL3
|
3.6
|
13.2
|
1.0
|
O
|
E:GLY1
|
3.6
|
12.6
|
1.0
|
N
|
E:ILE2
|
3.7
|
11.3
|
1.0
|
HB3
|
E:GLU4
|
3.7
|
16.1
|
1.0
|
H
|
E:ILE2
|
3.8
|
13.3
|
1.0
|
HG2
|
F:LYS29
|
3.8
|
22.1
|
1.0
|
CA
|
E:VAL3
|
3.8
|
11.3
|
1.0
|
HB2
|
E:GLU4
|
3.8
|
13.7
|
1.0
|
H3
|
E:GLY1
|
3.8
|
17.5
|
1.0
|
HG23
|
E:VAL3
|
3.8
|
12.5
|
1.0
|
CA
|
F:LYS29
|
3.9
|
16.6
|
1.0
|
C
|
F:LYS29
|
3.9
|
18.9
|
1.0
|
CB
|
F:LYS29
|
3.9
|
19.1
|
1.0
|
CB
|
F:THR30
|
3.9
|
23.8
|
1.0
|
CG2
|
F:THR30
|
4.0
|
27.2
|
1.0
|
C
|
E:VAL3
|
4.1
|
11.9
|
1.0
|
CB
|
E:GLU4
|
4.2
|
14.7
|
1.0
|
HG21
|
F:THR30
|
4.2
|
24.0
|
1.0
|
CA
|
F:THR30
|
4.2
|
25.3
|
1.0
|
CG2
|
E:VAL3
|
4.2
|
14.1
|
1.0
|
C
|
F:PRO28
|
4.2
|
14.5
|
1.0
|
C
|
E:ILE2
|
4.2
|
9.4
|
1.0
|
H2
|
E:GLY1
|
4.3
|
14.3
|
1.0
|
HG21
|
E:ILE2
|
4.3
|
8.8
|
1.0
|
HA2
|
E:GLY1
|
4.3
|
14.3
|
1.0
|
CA
|
F:PRO28
|
4.3
|
12.9
|
1.0
|
OXT
|
F:THR30
|
4.4
|
24.8
|
1.0
|
HG21
|
E:VAL3
|
4.4
|
14.2
|
1.0
|
CG
|
F:LYS29
|
4.4
|
21.5
|
1.0
|
CA
|
E:GLU4
|
4.4
|
12.1
|
1.0
|
CA
|
E:ILE2
|
4.5
|
9.0
|
1.0
|
H
|
E:GLN5
|
4.7
|
13.5
|
0.4
|
H
|
E:GLN5
|
4.7
|
13.5
|
0.6
|
HG11
|
E:VAL3
|
4.7
|
12.5
|
1.0
|
CG1
|
E:VAL3
|
4.7
|
13.2
|
1.0
|
O
|
F:LYS29
|
4.8
|
25.5
|
1.0
|
C
|
F:THR30
|
4.8
|
24.2
|
1.0
|
HA
|
E:VAL3
|
4.8
|
12.6
|
1.0
|
HB2
|
F:PRO28
|
4.8
|
16.7
|
1.0
|
HB3
|
F:LYS29
|
4.9
|
19.6
|
1.0
|
HG3
|
F:LYS29
|
4.9
|
23.3
|
1.0
|
HB
|
F:THR30
|
4.9
|
25.2
|
1.0
|
HA
|
F:LYS29
|
4.9
|
17.7
|
1.0
|
O
|
F:HOH1102
|
4.9
|
10.3
|
1.0
|
CB
|
F:PRO28
|
5.0
|
15.8
|
1.0
|
HG13
|
E:VAL3
|
5.0
|
12.4
|
1.0
|
|
Chlorine binding site 6 out
of 7 in 1g7a
Go back to
Chlorine Binding Sites List in 1g7a
Chlorine binding site 6 out
of 7 in the 1.2 A Structure of T3R3 Human Insulin at 100 K
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of 1.2 A Structure of T3R3 Human Insulin at 100 K within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cl932
b:15.3
occ:0.50
|
O
|
F:HOH933
|
1.4
|
14.4
|
0.5
|
ZN
|
F:ZN931
|
2.1
|
9.3
|
0.3
|
O
|
F:HOH1803
|
2.9
|
25.6
|
0.5
|
H22
|
F:ACN992
|
3.2
|
21.2
|
1.0
|
HE2
|
D:PHE1
|
3.4
|
21.5
|
0.5
|
NE2
|
F:HIS10
|
3.5
|
9.1
|
1.0
|
HD2
|
F:HIS10
|
3.7
|
11.1
|
1.0
|
CD2
|
F:HIS10
|
4.0
|
7.5
|
1.0
|
C2
|
F:ACN992
|
4.2
|
24.3
|
1.0
|
H21
|
F:ACN992
|
4.2
|
22.6
|
1.0
|
CE2
|
D:PHE1
|
4.2
|
21.3
|
0.5
|
HD2
|
D:PHE1
|
4.5
|
22.0
|
0.5
|
O
|
F:HOH1804
|
4.5
|
18.8
|
0.5
|
CE1
|
F:HIS10
|
4.6
|
12.6
|
1.0
|
CD2
|
D:PHE1
|
4.7
|
20.2
|
0.5
|
H13
|
F:ACN992
|
4.7
|
22.5
|
1.0
|
C
|
F:ACN992
|
4.9
|
23.7
|
1.0
|
H23
|
F:ACN992
|
5.0
|
20.7
|
1.0
|
|
Chlorine binding site 7 out
of 7 in 1g7a
Go back to
Chlorine Binding Sites List in 1g7a
Chlorine binding site 7 out
of 7 in the 1.2 A Structure of T3R3 Human Insulin at 100 K
Mono view
Stereo pair view
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A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of 1.2 A Structure of T3R3 Human Insulin at 100 K within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Cl942
b:14.6
occ:0.33
|
ZN
|
H:ZN941
|
2.3
|
11.4
|
0.3
|
HB3
|
H:LEU6
|
2.7
|
17.6
|
1.0
|
HD11
|
H:LEU6
|
3.2
|
17.9
|
1.0
|
HD12
|
H:LEU6
|
3.3
|
19.6
|
1.0
|
NE2
|
H:HIS10
|
3.4
|
10.9
|
1.0
|
CB
|
H:LEU6
|
3.6
|
17.0
|
1.0
|
HD2
|
H:HIS10
|
3.6
|
14.7
|
1.0
|
HB2
|
H:LEU6
|
3.6
|
14.6
|
1.0
|
CD1
|
H:LEU6
|
3.7
|
20.3
|
1.0
|
CD2
|
H:HIS10
|
3.9
|
10.9
|
1.0
|
CG
|
H:LEU6
|
4.2
|
17.3
|
1.0
|
HD23
|
H:LEU6
|
4.4
|
17.9
|
1.0
|
CE1
|
H:HIS10
|
4.5
|
13.8
|
1.0
|
HD13
|
H:LEU6
|
4.7
|
18.9
|
1.0
|
CA
|
H:LEU6
|
4.7
|
12.8
|
1.0
|
O
|
H:LEU6
|
4.8
|
12.9
|
1.0
|
C
|
H:LEU6
|
4.8
|
12.5
|
1.0
|
HE1
|
H:HIS10
|
4.9
|
14.1
|
1.0
|
HA
|
H:LEU6
|
4.9
|
15.9
|
1.0
|
CD2
|
H:LEU6
|
4.9
|
19.4
|
1.0
|
|
Reference:
G.D.Smith,
W.A.Pangborn,
R.H.Blessing.
Phase Changes in T(3)R(3)(F) Human Insulin: Temperature or Pressure Induced? Acta Crystallogr.,Sect.D V. 57 1091 2001.
ISSN: ISSN 0907-4449
PubMed: 11468392
DOI: 10.1107/S0907444901007685
Page generated: Fri Jul 19 22:07:58 2024
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