Chlorine in PDB 1g7b: 1.3 A Structure of T3R3 Human Insulin at 100 K
Protein crystallography data
The structure of 1.3 A Structure of T3R3 Human Insulin at 100 K, PDB code: 1g7b
was solved by
G.D.Smith,
W.A.Pangborn,
R.H.Blessing,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
31.80 /
1.30
|
Space group
|
H 3
|
Cell size a, b, c (Å), α, β, γ (°)
|
80.050,
80.050,
71.459,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
17.6 /
20.4
|
Other elements in 1g7b:
The structure of 1.3 A Structure of T3R3 Human Insulin at 100 K also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the 1.3 A Structure of T3R3 Human Insulin at 100 K
(pdb code 1g7b). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the
1.3 A Structure of T3R3 Human Insulin at 100 K, PDB code: 1g7b:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
Chlorine binding site 1 out
of 7 in 1g7b
Go back to
Chlorine Binding Sites List in 1g7b
Chlorine binding site 1 out
of 7 in the 1.3 A Structure of T3R3 Human Insulin at 100 K
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of 1.3 A Structure of T3R3 Human Insulin at 100 K within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl902
b:19.9
occ:0.33
|
ZN
|
B:ZN901
|
2.2
|
11.9
|
0.3
|
NE2
|
B:HIS10
|
3.5
|
12.1
|
1.0
|
HD2
|
B:HIS10
|
3.6
|
12.0
|
1.0
|
CD2
|
B:HIS10
|
3.9
|
11.5
|
1.0
|
CE1
|
B:HIS10
|
4.7
|
12.7
|
1.0
|
O
|
B:HOH1271
|
4.8
|
40.1
|
1.0
|
|
Chlorine binding site 2 out
of 7 in 1g7b
Go back to
Chlorine Binding Sites List in 1g7b
Chlorine binding site 2 out
of 7 in the 1.3 A Structure of T3R3 Human Insulin at 100 K
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of 1.3 A Structure of T3R3 Human Insulin at 100 K within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl912
b:14.5
occ:0.15
|
O
|
D:HOH1814
|
1.3
|
14.9
|
0.2
|
ZN
|
D:ZN911
|
2.2
|
12.0
|
0.1
|
HB3
|
D:LEU6
|
2.7
|
12.6
|
1.0
|
HD11
|
D:LEU6
|
2.9
|
15.8
|
1.0
|
HD13
|
D:LEU6
|
3.4
|
14.5
|
1.0
|
NE2
|
D:HIS10
|
3.5
|
10.7
|
0.5
|
O
|
D:HOH971
|
3.5
|
12.4
|
0.6
|
CD1
|
D:LEU6
|
3.5
|
15.4
|
1.0
|
HD2
|
D:HIS10
|
3.6
|
12.7
|
0.5
|
CB
|
D:LEU6
|
3.7
|
11.3
|
1.0
|
HD22
|
D:LEU6
|
3.9
|
15.4
|
1.0
|
CD2
|
D:HIS10
|
3.9
|
13.2
|
0.5
|
HB2
|
D:LEU6
|
4.0
|
12.2
|
1.0
|
CG
|
D:LEU6
|
4.1
|
13.9
|
1.0
|
O
|
D:HOH1150
|
4.2
|
23.8
|
0.3
|
CD2
|
D:LEU6
|
4.4
|
13.6
|
1.0
|
HD21
|
D:LEU6
|
4.4
|
14.7
|
1.0
|
HD12
|
D:LEU6
|
4.5
|
15.8
|
1.0
|
CE1
|
D:HIS10
|
4.6
|
14.8
|
0.5
|
CA
|
D:LEU6
|
4.8
|
10.1
|
1.0
|
HE1
|
D:HIS10
|
4.9
|
15.4
|
0.5
|
O
|
D:LEU6
|
4.9
|
11.7
|
1.0
|
C
|
D:LEU6
|
4.9
|
10.4
|
1.0
|
HA
|
D:LEU6
|
4.9
|
8.4
|
1.0
|
|
Chlorine binding site 3 out
of 7 in 1g7b
Go back to
Chlorine Binding Sites List in 1g7b
Chlorine binding site 3 out
of 7 in the 1.3 A Structure of T3R3 Human Insulin at 100 K
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of 1.3 A Structure of T3R3 Human Insulin at 100 K within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl922
b:10.8
occ:0.55
|
ZN
|
D:ZN921
|
2.2
|
10.0
|
0.6
|
HD2
|
D:HIS10
|
3.0
|
9.0
|
0.6
|
HD12
|
C:LEU16
|
3.1
|
14.3
|
1.0
|
HD22
|
D:LEU11
|
3.1
|
15.8
|
1.0
|
O
|
C:HOH1114
|
3.3
|
15.2
|
1.0
|
NE2
|
D:HIS10
|
3.4
|
8.0
|
0.6
|
CD2
|
D:HIS10
|
3.5
|
7.2
|
0.6
|
HB3
|
D:ALA14
|
3.7
|
10.5
|
1.0
|
HD23
|
C:LEU16
|
3.8
|
15.9
|
1.0
|
CL
|
D:CL923
|
3.8
|
19.2
|
0.6
|
HB1
|
D:ALA14
|
3.9
|
8.2
|
1.0
|
HB2
|
D:ALA14
|
4.0
|
8.3
|
1.0
|
CD2
|
D:LEU11
|
4.1
|
14.8
|
1.0
|
CB
|
D:ALA14
|
4.1
|
10.9
|
1.0
|
CD1
|
C:LEU16
|
4.1
|
13.7
|
1.0
|
HG23
|
C:ILE10
|
4.2
|
21.8
|
1.0
|
HD21
|
D:LEU11
|
4.2
|
14.7
|
1.0
|
HA
|
D:LEU11
|
4.2
|
8.5
|
1.0
|
HD21
|
C:LEU16
|
4.3
|
16.2
|
1.0
|
HD11
|
C:LEU16
|
4.4
|
13.7
|
1.0
|
H
|
C:CYS11
|
4.4
|
18.6
|
1.0
|
HD23
|
D:LEU11
|
4.4
|
15.8
|
1.0
|
O
|
C:HOH1935
|
4.4
|
15.2
|
0.3
|
O
|
C:CYS11
|
4.4
|
19.6
|
1.0
|
CD2
|
C:LEU16
|
4.5
|
15.7
|
1.0
|
HB2
|
C:CYS11
|
4.5
|
17.2
|
1.0
|
CE1
|
D:HIS10
|
4.7
|
9.7
|
0.6
|
HD13
|
C:LEU16
|
4.7
|
12.6
|
1.0
|
CG
|
C:LEU16
|
4.8
|
12.9
|
1.0
|
CG
|
D:HIS10
|
4.9
|
7.7
|
0.6
|
HG
|
C:LEU16
|
4.9
|
14.6
|
1.0
|
HB3
|
C:CYS6
|
5.0
|
14.6
|
1.0
|
HB3
|
D:HIS10
|
5.0
|
10.7
|
0.5
|
|
Chlorine binding site 4 out
of 7 in 1g7b
Go back to
Chlorine Binding Sites List in 1g7b
Chlorine binding site 4 out
of 7 in the 1.3 A Structure of T3R3 Human Insulin at 100 K
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of 1.3 A Structure of T3R3 Human Insulin at 100 K within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl923
b:19.2
occ:0.55
|
ZN
|
D:ZN921
|
2.2
|
10.0
|
0.6
|
NE2
|
D:HIS10
|
3.4
|
8.0
|
0.6
|
HE1
|
D:HIS10
|
3.5
|
9.1
|
0.6
|
CL
|
D:CL922
|
3.8
|
10.8
|
0.6
|
CE1
|
D:HIS10
|
3.8
|
9.7
|
0.6
|
HB3
|
D:ALA14
|
4.0
|
10.5
|
1.0
|
O
|
D:HOH1179
|
4.4
|
29.0
|
1.0
|
HB2
|
D:ALA14
|
4.6
|
8.3
|
1.0
|
CD2
|
D:HIS10
|
4.7
|
7.2
|
0.6
|
CB
|
D:ALA14
|
4.8
|
10.9
|
1.0
|
|
Chlorine binding site 5 out
of 7 in 1g7b
Go back to
Chlorine Binding Sites List in 1g7b
Chlorine binding site 5 out
of 7 in the 1.3 A Structure of T3R3 Human Insulin at 100 K
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of 1.3 A Structure of T3R3 Human Insulin at 100 K within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl1101
b:18.3
occ:1.00
|
HG1
|
F:THR30
|
2.2
|
26.2
|
1.0
|
H
|
F:LYS29
|
2.3
|
18.9
|
1.0
|
H
|
E:GLU4
|
2.5
|
15.9
|
1.0
|
H
|
E:VAL3
|
2.6
|
12.3
|
1.0
|
HB
|
E:VAL3
|
2.7
|
15.7
|
1.0
|
HA3
|
E:GLY1
|
2.7
|
15.1
|
1.0
|
H2
|
E:GLY1
|
2.7
|
16.5
|
1.0
|
H
|
F:THR30
|
3.0
|
24.2
|
1.0
|
OG1
|
F:THR30
|
3.1
|
26.5
|
1.0
|
HB2
|
F:LYS29
|
3.2
|
20.7
|
1.0
|
CA
|
E:GLY1
|
3.2
|
15.2
|
1.0
|
C
|
E:GLY1
|
3.2
|
13.7
|
1.0
|
N
|
F:LYS29
|
3.2
|
18.2
|
1.0
|
N
|
E:VAL3
|
3.3
|
11.3
|
1.0
|
HG22
|
F:THR30
|
3.3
|
25.0
|
1.0
|
N
|
E:GLY1
|
3.4
|
18.1
|
1.0
|
N
|
E:GLU4
|
3.4
|
12.8
|
1.0
|
HA
|
F:PRO28
|
3.5
|
15.8
|
1.0
|
N
|
F:THR30
|
3.5
|
22.5
|
1.0
|
CB
|
E:VAL3
|
3.6
|
14.7
|
1.0
|
O
|
E:GLY1
|
3.6
|
14.6
|
1.0
|
N
|
E:ILE2
|
3.7
|
12.2
|
1.0
|
HB3
|
E:GLU4
|
3.7
|
17.6
|
1.0
|
H
|
E:ILE2
|
3.8
|
14.3
|
1.0
|
HG2
|
F:LYS29
|
3.8
|
23.9
|
1.0
|
HG22
|
E:VAL3
|
3.8
|
16.4
|
1.0
|
CA
|
E:VAL3
|
3.8
|
12.8
|
1.0
|
HB2
|
E:GLU4
|
3.8
|
16.4
|
1.0
|
H1
|
E:GLY1
|
3.8
|
18.2
|
1.0
|
CA
|
F:LYS29
|
3.9
|
17.9
|
1.0
|
CB
|
F:LYS29
|
3.9
|
22.8
|
1.0
|
C
|
F:LYS29
|
3.9
|
21.7
|
1.0
|
CB
|
F:THR30
|
4.0
|
24.3
|
1.0
|
CG2
|
F:THR30
|
4.1
|
25.3
|
1.0
|
C
|
E:VAL3
|
4.1
|
14.1
|
1.0
|
CB
|
E:GLU4
|
4.2
|
16.7
|
1.0
|
HG23
|
E:ILE2
|
4.2
|
12.0
|
1.0
|
HA2
|
E:GLY1
|
4.2
|
14.8
|
1.0
|
C
|
E:ILE2
|
4.2
|
11.3
|
1.0
|
H3
|
E:GLY1
|
4.2
|
17.5
|
1.0
|
C
|
F:PRO28
|
4.2
|
17.0
|
1.0
|
CG2
|
E:VAL3
|
4.2
|
15.6
|
1.0
|
CA
|
F:THR30
|
4.3
|
26.1
|
1.0
|
CA
|
F:PRO28
|
4.3
|
15.3
|
1.0
|
CG
|
F:LYS29
|
4.4
|
22.6
|
1.0
|
CA
|
E:GLU4
|
4.4
|
13.7
|
1.0
|
HG23
|
F:THR30
|
4.4
|
25.3
|
1.0
|
OXT
|
F:THR30
|
4.5
|
25.9
|
1.0
|
CA
|
E:ILE2
|
4.5
|
10.4
|
1.0
|
HG11
|
E:VAL3
|
4.7
|
12.5
|
1.0
|
H
|
E:GLN5
|
4.7
|
13.2
|
1.0
|
HG23
|
E:VAL3
|
4.7
|
16.5
|
1.0
|
CG1
|
E:VAL3
|
4.7
|
14.4
|
1.0
|
HB2
|
F:PRO28
|
4.8
|
18.1
|
1.0
|
HA
|
E:VAL3
|
4.8
|
14.1
|
1.0
|
O
|
F:LYS29
|
4.8
|
26.7
|
1.0
|
HB3
|
F:LYS29
|
4.8
|
21.4
|
1.0
|
HG3
|
F:LYS29
|
4.8
|
24.8
|
1.0
|
C
|
F:THR30
|
4.9
|
26.8
|
1.0
|
HA
|
F:LYS29
|
4.9
|
20.1
|
1.0
|
O
|
F:HOH1102
|
4.9
|
12.7
|
1.0
|
CB
|
F:PRO28
|
5.0
|
17.6
|
1.0
|
HB
|
F:THR30
|
5.0
|
25.2
|
1.0
|
HB3
|
F:PRO28
|
5.0
|
18.1
|
1.0
|
HG21
|
F:THR30
|
5.0
|
25.2
|
1.0
|
|
Chlorine binding site 6 out
of 7 in 1g7b
Go back to
Chlorine Binding Sites List in 1g7b
Chlorine binding site 6 out
of 7 in the 1.3 A Structure of T3R3 Human Insulin at 100 K
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of 1.3 A Structure of T3R3 Human Insulin at 100 K within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cl932
b:16.7
occ:0.17
|
O
|
F:HOH933
|
1.3
|
14.2
|
0.5
|
ZN
|
F:ZN931
|
2.1
|
10.8
|
0.3
|
O
|
D:HOH1803
|
2.9
|
28.5
|
0.5
|
NE2
|
F:HIS10
|
3.4
|
10.9
|
1.0
|
HD2
|
F:HIS10
|
3.6
|
8.4
|
1.0
|
CD2
|
F:HIS10
|
3.9
|
9.8
|
1.0
|
CE1
|
F:HIS10
|
4.6
|
14.2
|
1.0
|
HE1
|
F:HIS10
|
4.9
|
15.1
|
1.0
|
|
Chlorine binding site 7 out
of 7 in 1g7b
Go back to
Chlorine Binding Sites List in 1g7b
Chlorine binding site 7 out
of 7 in the 1.3 A Structure of T3R3 Human Insulin at 100 K
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of 1.3 A Structure of T3R3 Human Insulin at 100 K within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Cl942
b:19.8
occ:0.33
|
ZN
|
H:ZN941
|
2.3
|
14.2
|
0.3
|
HB3
|
H:LEU6
|
2.7
|
21.6
|
1.0
|
HD13
|
H:LEU6
|
2.9
|
23.3
|
1.0
|
NE2
|
H:HIS10
|
3.3
|
13.1
|
1.0
|
HD12
|
H:LEU6
|
3.6
|
22.4
|
1.0
|
CB
|
H:LEU6
|
3.6
|
21.7
|
1.0
|
HD2
|
H:HIS10
|
3.6
|
13.6
|
1.0
|
HB2
|
H:LEU6
|
3.6
|
19.1
|
1.0
|
CD1
|
H:LEU6
|
3.7
|
23.2
|
1.0
|
CD2
|
H:HIS10
|
3.9
|
12.7
|
1.0
|
CG
|
H:LEU6
|
4.2
|
21.7
|
1.0
|
CE1
|
H:HIS10
|
4.5
|
16.8
|
1.0
|
HD22
|
H:LEU6
|
4.5
|
22.7
|
1.0
|
HD11
|
H:LEU6
|
4.6
|
23.0
|
1.0
|
CA
|
H:LEU6
|
4.7
|
20.2
|
1.0
|
HE1
|
H:HIS10
|
4.7
|
17.3
|
1.0
|
C
|
H:LEU6
|
4.8
|
20.6
|
1.0
|
O
|
H:LEU6
|
4.8
|
18.8
|
1.0
|
HA
|
H:LEU6
|
4.9
|
21.1
|
1.0
|
CD2
|
H:LEU6
|
4.9
|
25.5
|
1.0
|
|
Reference:
G.D.Smith,
W.A.Pangborn,
R.H.Blessing.
Phase Changes in T(3)R(3)(F) Human Insulin: Temperature or Pressure Induced? Acta Crystallogr.,Sect.D V. 57 1091 2001.
ISSN: ISSN 0907-4449
PubMed: 11468392
DOI: 10.1107/S0907444901007685
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