Atomistry » Chlorine » PDB 1hba-1i3k » 1hbo
Atomistry »
  Chlorine »
    PDB 1hba-1i3k »
      1hbo »

Chlorine in PDB 1hbo: Methyl-Coenzyme M Reductase Mcr-RED1-Silent

Protein crystallography data

The structure of Methyl-Coenzyme M Reductase Mcr-RED1-Silent, PDB code: 1hbo was solved by W.Grabarse, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.78
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 81.700, 117.300, 122.400, 90.00, 92.00, 90.00
R / Rfree (%) 17.7 / 21.3

Other elements in 1hbo:

The structure of Methyl-Coenzyme M Reductase Mcr-RED1-Silent also contains other interesting chemical elements:

Nickel (Ni) 2 atoms
Magnesium (Mg) 4 atoms
Zinc (Zn) 1 atom
Sodium (Na) 8 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Methyl-Coenzyme M Reductase Mcr-RED1-Silent (pdb code 1hbo). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Methyl-Coenzyme M Reductase Mcr-RED1-Silent, PDB code: 1hbo:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1hbo

Go back to Chlorine Binding Sites List in 1hbo
Chlorine binding site 1 out of 2 in the Methyl-Coenzyme M Reductase Mcr-RED1-Silent


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Methyl-Coenzyme M Reductase Mcr-RED1-Silent within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1446

b:25.5
occ:1.00
O B:HOH2111 3.0 27.1 1.0
O B:HOH2255 3.0 17.5 1.0
O B:HOH2312 3.2 22.9 1.0
NH2 B:ARG235 3.2 15.3 1.0
CD B:ARG235 3.7 16.9 1.0
CB B:ARG235 3.8 15.3 1.0
CB B:ALA300 3.8 15.4 1.0
CG B:ARG235 3.9 16.7 1.0
CZ B:ARG235 4.2 16.6 1.0
NE B:ARG235 4.4 16.2 1.0
O B:HOH2309 4.5 40.6 1.0
CB C:LEU248 4.6 41.4 1.0
O B:ALA232 4.7 16.8 1.0
CD1 C:LEU248 4.7 41.6 1.0
O B:HOH2253 4.8 16.0 1.0
N B:MET236 4.8 14.4 1.0
OD1 B:ASP298 4.9 20.3 1.0
O B:HOH2146 4.9 64.0 1.0
CA B:ARG235 5.0 15.3 1.0

Chlorine binding site 2 out of 2 in 1hbo

Go back to Chlorine Binding Sites List in 1hbo
Chlorine binding site 2 out of 2 in the Methyl-Coenzyme M Reductase Mcr-RED1-Silent


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Methyl-Coenzyme M Reductase Mcr-RED1-Silent within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl1445

b:29.3
occ:1.00
O E:HOH2288 3.1 26.2 1.0
O E:HOH2104 3.1 31.5 1.0
O E:HOH2244 3.1 21.1 1.0
NH2 E:ARG235 3.2 24.7 1.0
CB E:ALA300 3.7 21.1 1.0
CD E:ARG235 3.8 23.8 1.0
CB E:ARG235 4.0 21.6 1.0
CG E:ARG235 4.0 22.4 1.0
CZ E:ARG235 4.2 25.8 1.0
O F:LEU248 4.4 40.0 0.0
NE E:ARG235 4.5 23.8 1.0
CB F:LEU248 4.5 39.9 1.0
CD1 F:LEU248 4.7 40.1 1.0
O E:HOH2242 4.7 21.6 1.0
O E:ALA232 4.7 20.2 1.0
O E:HOH2286 4.8 56.0 1.0
OD1 E:ASP298 4.8 26.1 1.0
N E:MET236 4.9 21.0 1.0

Reference:

W.Grabarse, F.Mahlert, E.C.Duin, M.Goubeaud, S.Shima, R.K.Thauer, V.Lamzin, U.Ermler. On the Mechanism of Biological Methane Formation: Structural Evidence For Conformational Changes in Methyl-Coenzyme M Reductase Upon Substrate Binding J.Mol.Biol. V. 309 315 2001.
ISSN: ISSN 0022-2836
PubMed: 11491299
DOI: 10.1006/JMBI.2001.4647
Page generated: Sat Dec 12 08:36:59 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy