Chlorine in PDB 1hha: Decaplanin First P6122-Form
Protein crystallography data
The structure of Decaplanin First P6122-Form, PDB code: 1hha
was solved by
C.Lehmann,
L.Vertessy,
G.M.Sheldrick,
Z.Dauter,
M.Dauter,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
23.23 /
1.90
|
Space group
|
P 61 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
64.364,
64.364,
84.128,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
21.6 /
26.5
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Decaplanin First P6122-Form
(pdb code 1hha). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Decaplanin First P6122-Form, PDB code: 1hha:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 1hha
Go back to
Chlorine Binding Sites List in 1hha
Chlorine binding site 1 out
of 4 in the Decaplanin First P6122-Form
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Decaplanin First P6122-Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl2
b:50.6
occ:1.00
|
CL
|
A:OMZ2
|
0.0
|
50.6
|
1.0
|
CE1
|
A:OMZ2
|
1.8
|
33.6
|
1.0
|
CZ
|
A:OMZ2
|
2.7
|
33.5
|
1.0
|
CD1
|
A:OMZ2
|
2.7
|
37.2
|
1.0
|
OH
|
A:OMZ2
|
3.0
|
32.6
|
1.0
|
C5
|
A:GHP4
|
3.4
|
34.2
|
1.0
|
O4
|
A:RAM10
|
3.6
|
45.1
|
1.0
|
C6
|
A:GHP4
|
3.6
|
34.0
|
1.0
|
CD1
|
B:OMX6
|
3.9
|
32.0
|
1.0
|
CE1
|
B:OMX6
|
4.0
|
30.7
|
1.0
|
CE2
|
A:OMZ2
|
4.0
|
32.4
|
1.0
|
C6
|
A:RAM10
|
4.0
|
45.2
|
1.0
|
CG
|
A:OMZ2
|
4.0
|
37.5
|
1.0
|
C5
|
A:RAM10
|
4.2
|
46.1
|
1.0
|
O
|
B:HOH2007
|
4.4
|
59.5
|
1.0
|
C4
|
A:GHP4
|
4.4
|
35.9
|
1.0
|
CD2
|
A:OMZ2
|
4.5
|
35.6
|
1.0
|
C4
|
A:RAM10
|
4.5
|
48.3
|
1.0
|
C2
|
B:ERE8
|
4.5
|
33.7
|
1.0
|
C1
|
B:ERE8
|
4.6
|
34.5
|
1.0
|
C1
|
A:GHP4
|
4.6
|
31.3
|
1.0
|
CG
|
B:OMX6
|
4.8
|
33.7
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 1hha
Go back to
Chlorine Binding Sites List in 1hha
Chlorine binding site 2 out
of 4 in the Decaplanin First P6122-Form
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Decaplanin First P6122-Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl2
b:47.2
occ:1.00
|
CL
|
B:OMZ2
|
0.0
|
47.2
|
1.0
|
CE1
|
B:OMZ2
|
1.8
|
30.8
|
1.0
|
CZ
|
B:OMZ2
|
2.7
|
30.3
|
1.0
|
CD1
|
B:OMZ2
|
2.7
|
31.9
|
1.0
|
OH
|
B:OMZ2
|
3.0
|
31.5
|
1.0
|
C5
|
B:GHP4
|
3.6
|
30.4
|
1.0
|
C6
|
B:GHP4
|
3.8
|
26.1
|
1.0
|
CD1
|
A:OMX6
|
3.9
|
34.9
|
1.0
|
CE2
|
B:OMZ2
|
4.0
|
31.0
|
1.0
|
CG
|
B:OMZ2
|
4.1
|
34.0
|
1.0
|
O
|
B:HOH2019
|
4.1
|
35.9
|
1.0
|
CE1
|
A:OMX6
|
4.1
|
32.3
|
1.0
|
O6
|
B:BGC9
|
4.2
|
38.9
|
1.0
|
O5
|
B:BGC9
|
4.4
|
30.5
|
1.0
|
C2
|
A:ERE8
|
4.5
|
29.6
|
1.0
|
CD2
|
B:OMZ2
|
4.5
|
32.0
|
1.0
|
C1
|
A:ERE8
|
4.5
|
33.1
|
1.0
|
C4
|
B:GHP4
|
4.5
|
31.0
|
1.0
|
C6
|
B:BGC9
|
4.6
|
35.2
|
1.0
|
C1
|
B:GHP4
|
4.8
|
27.7
|
1.0
|
CG
|
A:OMX6
|
4.8
|
33.0
|
1.0
|
O
|
B:ASN3
|
5.0
|
34.4
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 1hha
Go back to
Chlorine Binding Sites List in 1hha
Chlorine binding site 3 out
of 4 in the Decaplanin First P6122-Form
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Decaplanin First P6122-Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl2
b:37.1
occ:1.00
|
CL
|
C:OMZ2
|
0.0
|
37.1
|
1.0
|
CE1
|
C:OMZ2
|
1.8
|
29.6
|
1.0
|
CZ
|
C:OMZ2
|
2.7
|
28.6
|
1.0
|
CD1
|
C:OMZ2
|
2.8
|
31.5
|
1.0
|
OH
|
C:OMZ2
|
3.0
|
32.4
|
1.0
|
C5
|
C:GHP4
|
3.6
|
31.8
|
1.0
|
O
|
C:HOH2016
|
3.7
|
29.6
|
1.0
|
CD1
|
D:OMX6
|
3.8
|
30.8
|
1.0
|
C6
|
C:GHP4
|
3.8
|
27.8
|
1.0
|
CE2
|
C:OMZ2
|
4.0
|
26.4
|
1.0
|
CG
|
C:OMZ2
|
4.1
|
29.8
|
1.0
|
CE1
|
D:OMX6
|
4.1
|
30.8
|
1.0
|
C1
|
D:ERE8
|
4.2
|
30.1
|
1.0
|
C2
|
D:ERE8
|
4.2
|
31.9
|
1.0
|
O6
|
C:BGC9
|
4.3
|
36.8
|
1.0
|
O5
|
C:BGC9
|
4.4
|
30.9
|
1.0
|
CD2
|
C:OMZ2
|
4.5
|
28.4
|
1.0
|
C4
|
C:GHP4
|
4.6
|
30.8
|
1.0
|
C6
|
C:BGC9
|
4.7
|
36.4
|
1.0
|
CG
|
D:OMX6
|
4.7
|
31.4
|
1.0
|
OC
|
D:OMX6
|
4.8
|
30.9
|
1.0
|
C1
|
C:GHP4
|
4.9
|
30.3
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 1hha
Go back to
Chlorine Binding Sites List in 1hha
Chlorine binding site 4 out
of 4 in the Decaplanin First P6122-Form
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Decaplanin First P6122-Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl2
b:49.6
occ:1.00
|
CL
|
D:OMZ2
|
0.0
|
49.6
|
1.0
|
CE1
|
D:OMZ2
|
1.8
|
35.2
|
1.0
|
CZ
|
D:OMZ2
|
2.7
|
34.5
|
1.0
|
CD1
|
D:OMZ2
|
2.7
|
36.9
|
1.0
|
OH
|
D:OMZ2
|
3.1
|
36.7
|
1.0
|
C5
|
D:GHP4
|
3.7
|
34.5
|
1.0
|
O4
|
D:RAM10
|
3.7
|
44.9
|
1.0
|
C6
|
D:GHP4
|
3.8
|
33.2
|
1.0
|
CE2
|
D:OMZ2
|
4.0
|
35.0
|
1.0
|
CG
|
D:OMZ2
|
4.1
|
34.3
|
1.0
|
C2
|
C:ERE8
|
4.2
|
34.4
|
1.0
|
CD1
|
C:OMX6
|
4.3
|
32.5
|
1.0
|
C1
|
C:ERE8
|
4.4
|
34.7
|
1.0
|
C6
|
D:RAM10
|
4.4
|
31.2
|
1.0
|
C5
|
D:RAM10
|
4.5
|
35.5
|
1.0
|
CD2
|
D:OMZ2
|
4.5
|
33.6
|
1.0
|
CE1
|
C:OMX6
|
4.6
|
31.8
|
1.0
|
C4
|
D:GHP4
|
4.7
|
36.5
|
1.0
|
C4
|
D:RAM10
|
4.7
|
39.7
|
1.0
|
O
|
C:HOH2004
|
4.8
|
23.7
|
0.5
|
C1
|
D:GHP4
|
4.8
|
31.8
|
1.0
|
|
Reference:
C.Lehmann,
J.E.Debreczeni,
G.Bunkoczi,
M.Dauter,
Z.Dauter,
L.Vertesy,
G.M.Sheldrick.
Structures of Four Crystal Forms of Decaplanin Helv.Chim.Acta V. 86 1478 2003.
ISSN: ISSN 0018-019X
DOI: 10.1002/HLCA.200390131
Page generated: Fri Jul 19 22:28:57 2024
|