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Chlorine in PDB 1iee: Structure of Tetragonal Hen Egg White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method

Enzymatic activity of Structure of Tetragonal Hen Egg White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method

All present enzymatic activity of Structure of Tetragonal Hen Egg White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method:
3.2.1.17;

Protein crystallography data

The structure of Structure of Tetragonal Hen Egg White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method, PDB code: 1iee was solved by C.Sauter, F.Otalora, J.-A.Gavira, O.Vidal, R.Giege, J.-M.Garcia-Ruiz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.00 / 0.94
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.061, 77.061, 37.223, 90.00, 90.00, 90.00
R / Rfree (%) 12.3 / 15.1

Other elements in 1iee:

The structure of Structure of Tetragonal Hen Egg White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Tetragonal Hen Egg White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method (pdb code 1iee). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Structure of Tetragonal Hen Egg White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method, PDB code: 1iee:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 1iee

Go back to Chlorine Binding Sites List in 1iee
Chlorine binding site 1 out of 5 in the Structure of Tetragonal Hen Egg White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Tetragonal Hen Egg White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:10.0
occ:0.70
 O A:HOH1218 0.7 17.8 0.3
O A:HOH1219 1.7 16.0 0.3
O A:HOH1217 2.8 17.6 0.3
OH A:TYR23 3.0 9.5 1.0
O A:HOH1217 3.1 14.2 0.4
O A:HOH1014 3.2 11.7 0.9
CZ A:TYR23 3.6 8.7 1.0
CE2 A:TYR23 3.7 8.4 1.0
CA A:GLY104 4.3 9.4 1.0
O A:ARG21 4.5 11.3 1.0
CE1 A:TYR23 4.8 8.2 1.0
N A:GLY104 4.9 10.1 1.0
CD2 A:TYR23 4.9 8.1 1.0

Chlorine binding site 2 out of 5 in 1iee

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Chlorine binding site 2 out of 5 in the Structure of Tetragonal Hen Egg White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Tetragonal Hen Egg White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:14.5
occ:0.75
 O A:HOH1220 2.7 17.9 0.2
OG A:SER24 3.1 12.9 1.0
N A:GLY26 3.1 8.5 1.0
CB A:SER24 3.5 10.0 1.0
CA A:GLY26 3.5 8.2 1.0
CA A:GLN121 3.6 12.5 1.0
CB A:GLN121 3.9 16.9 0.4
CD1 A:ILE124 3.9 30.8 1.0
N A:GLN121 4.0 11.8 1.0
CB A:GLN121 4.0 15.7 0.6
CG A:GLN121 4.2 19.6 0.6
N A:LEU25 4.2 9.4 1.0
C A:VAL120 4.3 10.2 1.0
CG2 A:VAL120 4.3 13.7 1.0
O A:VAL120 4.3 10.6 1.0
C A:LEU25 4.3 8.1 1.0
C A:SER24 4.4 8.6 1.0
CG1 A:ILE124 4.4 15.6 1.0
C A:GLY26 4.5 7.5 1.0
CA A:SER24 4.6 9.4 1.0
N A:ASN27 4.6 7.5 1.0
CA A:LEU25 4.7 9.0 1.0
O A:HOH1189 4.8 14.2 0.4
O A:HOH1193 4.8 20.0 0.4
O A:SER24 4.8 9.2 1.0
C A:GLN121 4.9 10.9 1.0

Chlorine binding site 3 out of 5 in 1iee

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Chlorine binding site 3 out of 5 in the Structure of Tetragonal Hen Egg White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Tetragonal Hen Egg White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:10.7
occ:0.48
 O A:HOH1227 0.9 14.8 0.5
O A:THR69 2.6 10.6 0.5
N A:THR69 3.1 11.3 0.5
N A:THR69 3.1 11.3 0.5
O A:HOH1221 3.2 11.9 0.5
O A:HOH1224 3.2 20.1 0.5
O A:HOH1111 3.2 20.9 0.6
C A:THR69 3.3 9.8 0.5
O A:HOH1225 3.3 10.6 0.5
CB A:SER72 3.4 12.3 0.5
O A:HOH1157 3.4 42.8 0.9
O A:THR69 3.5 10.4 0.5
N A:ARG68 3.6 11.3 1.0
CA A:THR69 3.6 10.0 0.5
C A:GLY67 3.6 13.1 1.0
C A:THR69 3.6 10.3 0.5
CA A:GLY67 3.7 13.8 1.0
OG A:SER72 3.7 11.6 0.5
OD1 A:ASN65 3.8 15.0 1.0
N A:GLY67 3.8 11.7 1.0
CA A:THR69 3.8 12.4 0.5
O A:HOH1222 4.0 14.0 0.5
CB A:THR69 4.0 10.5 0.5
OG A:SER72 4.0 12.2 0.5
CB A:THR69 4.1 13.3 0.5
C A:ARG68 4.1 11.5 0.5
C A:ARG68 4.1 13.4 0.5
O A:GLY67 4.2 17.5 1.0
CA A:ARG68 4.3 12.6 1.0
OD1 A:ASP66 4.3 9.7 1.0
N A:PRO70 4.4 10.7 0.5
N A:PRO70 4.4 10.8 0.5
N A:SER72 4.6 10.8 0.5
CA A:SER72 4.6 11.7 0.5
NA A:NA200 4.7 10.0 0.5
OG1 A:THR69 4.7 19.1 0.5
O A:HOH1103 4.7 16.8 0.5
OG1 A:THR69 4.7 8.2 0.5
CA A:PRO70 4.9 10.3 0.5
C A:ASP66 4.9 10.2 1.0
CA A:PRO70 4.9 10.5 0.5
CG A:ASN65 5.0 14.7 1.0
CB A:SER72 5.0 12.8 0.5

Chlorine binding site 4 out of 5 in 1iee

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Chlorine binding site 4 out of 5 in the Structure of Tetragonal Hen Egg White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of Tetragonal Hen Egg White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:20.2
occ:0.44
 O A:HOH1233 1.2 11.6 0.6
O A:HOH1232 3.2 22.6 0.6
N A:ILE88 3.3 11.0 0.5
O A:HOH1232 3.3 18.3 0.4
N A:ILE88 3.4 11.5 0.6
NE2 A:HIS15 3.4 17.9 1.0
O A:HOH1198 3.5 26.8 0.5
NH2 A:ARG14 3.6 13.5 0.7
CG1 A:ILE88 3.6 12.1 1.0
OD1 A:ASP87 3.6 14.2 0.6
OD1 A:ASP87 3.8 18.5 0.5
CA A:ASP87 3.9 13.6 0.5
CG A:ASP87 3.9 15.0 0.5
CD2 A:HIS15 4.0 17.5 1.0
C A:ASP87 4.0 12.2 0.5
CA A:ASP87 4.1 14.0 0.6
NH1 A:ARG14 4.1 26.6 0.3
C A:ASP87 4.2 11.1 0.6
CB A:ALA11 4.3 11.8 1.0
CA A:ILE88 4.3 10.3 1.0
OD2 A:ASP87 4.3 23.3 0.5
CB A:ILE88 4.3 10.5 1.0
O A:HOH1072 4.3 24.1 0.9
CB A:ASP87 4.3 15.7 0.5
CZ A:ARG14 4.4 11.7 0.7
CG A:ASP87 4.4 16.9 0.6
CE1 A:HIS15 4.5 19.6 1.0
CD1 A:ILE88 4.6 12.7 1.0
N A:THR89 4.6 10.3 1.0
NH1 A:ARG14 4.6 15.0 0.7
CG2 A:ILE88 4.6 13.2 1.0
O A:SER86 4.8 17.8 1.0
C A:ILE88 4.8 9.6 1.0
CB A:ASP87 4.8 14.8 0.6
NH2 A:ARG14 4.8 16.7 0.3
CZ A:ARG14 4.8 16.3 0.3
OG1 A:THR89 4.9 13.9 1.0
CZ A:PHE3 4.9 12.5 1.0

Chlorine binding site 5 out of 5 in 1iee

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Chlorine binding site 5 out of 5 in the Structure of Tetragonal Hen Egg White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Structure of Tetragonal Hen Egg White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:19.0
occ:0.75
 O A:HOH1096 3.3 33.4 0.9
NZ A:LYS33 3.5 19.7 1.0
CE2 A:PHE38 3.6 10.8 1.0
O A:HOH1146 3.8 33.3 0.6
CZ3 A:TRP123 4.0 14.0 1.0
CE A:LYS33 4.0 16.2 1.0
CD A:LYS33 4.1 13.0 1.0
CD A:ARG5 4.1 11.5 1.0
CZ A:PHE38 4.3 9.4 1.0
CB A:ARG5 4.4 11.0 1.0
CD2 A:PHE38 4.6 10.1 1.0
NE A:ARG5 4.6 11.9 1.0
CG A:ARG5 4.7 11.4 1.0
CE3 A:TRP123 4.7 11.2 1.0
CH2 A:TRP123 4.9 13.4 1.0
O A:HOH1075 4.9 23.4 1.0
O A:HOH1174 5.0 39.6 1.0

Reference:

C.Sauter, F.Otalora, J.A.Gavira, O.Vidal, R.Giege, J.M.Garcia-Ruiz. Structure of Tetragonal Hen Egg-White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method. Acta Crystallogr.,Sect.D V. 57 1119 2001.
ISSN: ISSN 0907-4449
PubMed: 11468395
DOI: 10.1107/S0907444901008873
Page generated: Fri Jul 19 22:43:42 2024

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