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Chlorine in PDB 1iqj: Human Coagulation Factor Xa in Complex with M55124

Enzymatic activity of Human Coagulation Factor Xa in Complex with M55124

All present enzymatic activity of Human Coagulation Factor Xa in Complex with M55124:
3.4.21.6;

Protein crystallography data

The structure of Human Coagulation Factor Xa in Complex with M55124, PDB code: 1iqj was solved by I.Shiromizu, T.Matsusue, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 3.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 72.000, 78.160, 56.750, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Other elements in 1iqj:

The structure of Human Coagulation Factor Xa in Complex with M55124 also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Human Coagulation Factor Xa in Complex with M55124 (pdb code 1iqj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Human Coagulation Factor Xa in Complex with M55124, PDB code: 1iqj:

Chlorine binding site 1 out of 1 in 1iqj

Go back to Chlorine Binding Sites List in 1iqj
Chlorine binding site 1 out of 1 in the Human Coagulation Factor Xa in Complex with M55124


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Human Coagulation Factor Xa in Complex with M55124 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:23.0
occ:1.00
CL29 A:XMH401 0.0 23.0 1.0
C33 A:XMH401 1.7 23.9 1.0
C31 A:XMH401 2.7 24.1 1.0
C32 A:XMH401 2.8 23.6 1.0
CZ A:TYR228 3.3 11.7 1.0
C A:GLY226 3.3 21.9 1.0
CA A:GLY226 3.4 24.4 1.0
CE1 A:TYR228 3.5 14.2 1.0
O A:ILE227 3.5 15.1 1.0
OH A:TYR228 3.5 14.9 1.0
O A:TRP215 3.6 9.4 1.0
N A:ILE227 3.6 19.1 1.0
CE2 A:TYR228 3.7 12.2 1.0
O A:GLY226 3.7 20.8 1.0
OD1 A:ASP189 3.9 24.6 1.0
C A:ILE227 4.0 16.2 1.0
CD1 A:TYR228 4.0 13.8 1.0
C25 A:XMH401 4.1 25.7 1.0
C30 A:XMH401 4.1 26.2 1.0
CD2 A:TYR228 4.2 12.4 1.0
CB A:ALA190 4.2 10.2 1.0
CG A:TYR228 4.3 13.3 1.0
CA A:ILE227 4.4 16.1 1.0
C A:TRP215 4.5 8.8 1.0
CG1 A:VAL213 4.6 15.2 1.0
C28 A:XMH401 4.7 27.8 1.0
N A:GLY226 4.7 26.4 1.0
N A:TYR228 4.7 18.1 1.0
N A:TRP215 4.8 11.2 1.0
CG A:ASP189 4.9 23.1 1.0
N A:SER214 4.9 10.9 1.0

Reference:

T.Matsusue, I.Shiromizu, A.Okamoto, K.Nakayama, H.Nishida, T.Mukaihira, Y.Miyazaki, F.Saitou, H.Morishita, S.Ohnishi, H.Mochizuki. Factor Xa Specific Inhibitor That Induces the Novel Binding Model in Complex with Human Fxa To Be Published.
Page generated: Fri Jul 19 22:49:26 2024

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