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Chlorine in PDB 1jfx: Crystal Structure of the Bacterial Lysozyme From Streptomyces Coelicolor at 1.65 A Resolution

Enzymatic activity of Crystal Structure of the Bacterial Lysozyme From Streptomyces Coelicolor at 1.65 A Resolution

All present enzymatic activity of Crystal Structure of the Bacterial Lysozyme From Streptomyces Coelicolor at 1.65 A Resolution:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of the Bacterial Lysozyme From Streptomyces Coelicolor at 1.65 A Resolution, PDB code: 1jfx was solved by A.Rau, T.Hogg, R.Marquardt, R.Hilgenfeld, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.93 / 1.65
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 111.150, 38.220, 51.040, 90.00, 108.36, 90.00
R / Rfree (%) 15.2 / 18.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Bacterial Lysozyme From Streptomyces Coelicolor at 1.65 A Resolution (pdb code 1jfx). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the Crystal Structure of the Bacterial Lysozyme From Streptomyces Coelicolor at 1.65 A Resolution, PDB code: 1jfx:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 1jfx

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Chlorine binding site 1 out of 8 in the Crystal Structure of the Bacterial Lysozyme From Streptomyces Coelicolor at 1.65 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Bacterial Lysozyme From Streptomyces Coelicolor at 1.65 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1001

b:15.6
occ:1.00
 O A:HOH1157 3.1 17.3 1.0
N A:ARG189 3.2 10.5 1.0
NH1 A:ARG199 3.3 11.5 1.0
CA A:GLY188 3.5 9.3 1.0
CD A:ARG199 3.8 8.3 1.0
C A:GLY188 3.8 9.8 1.0
O A:ARG189 3.9 13.3 1.0
CA A:ARG189 4.2 10.5 1.0
CL A:CL1004 4.2 20.9 1.0
CB A:ARG189 4.3 13.4 1.0
CZ A:ARG199 4.4 7.4 1.0
C A:ARG189 4.5 12.0 1.0
NE A:ARG199 4.5 7.9 1.0
O A:HOH1091 4.6 22.1 1.0
O A:HOH1306 4.7 24.0 1.0
O A:HOH1348 4.7 32.1 1.0
O A:HOH1175 4.7 23.9 1.0
N A:GLY188 4.9 9.6 1.0
CG A:ARG189 4.9 10.6 1.0

Chlorine binding site 2 out of 8 in 1jfx

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Chlorine binding site 2 out of 8 in the Crystal Structure of the Bacterial Lysozyme From Streptomyces Coelicolor at 1.65 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Bacterial Lysozyme From Streptomyces Coelicolor at 1.65 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1002

b:13.8
occ:1.00
 O A:HOH1025 3.1 9.6 1.0
NE1 A:TRP179 3.2 8.4 1.0
O A:HOH1350 3.2 21.7 1.0
O A:HOH1158 3.4 16.0 1.0
CD1 A:TRP179 4.1 7.4 1.0
CD A:PRO170 4.2 8.1 1.0
CE2 A:TRP179 4.2 8.3 1.0
CB A:ALA169 4.3 10.1 1.0
CZ2 A:TRP179 4.5 8.6 1.0
CG A:PRO170 4.8 6.8 1.0
O A:HOH1289 4.8 21.5 1.0
O A:HOH1181 5.0 23.6 1.0

Chlorine binding site 3 out of 8 in 1jfx

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Chlorine binding site 3 out of 8 in the Crystal Structure of the Bacterial Lysozyme From Streptomyces Coelicolor at 1.65 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Bacterial Lysozyme From Streptomyces Coelicolor at 1.65 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1003

b:15.9
occ:1.00
 NE A:ARG133 3.0 8.7 1.0
N A:ASP134 3.1 6.7 1.0
O A:HOH1052 3.2 8.8 1.0
O A:HOH1205 3.4 29.4 1.0
NH2 A:ARG133 3.5 9.4 1.0
ND2 A:ASN215 3.5 8.2 1.0
CZ A:ARG133 3.7 6.0 1.0
CA A:ARG133 3.7 6.5 1.0
CB A:ASP134 3.8 9.9 1.0
O A:HOH1385 3.8 28.1 1.0
OD2 A:ASP134 3.8 13.4 1.0
C A:ARG133 3.9 6.8 1.0
CG A:ASP134 3.9 11.1 1.0
O A:HOH1261 3.9 15.7 1.0
CD A:ARG133 4.0 6.4 1.0
CA A:ASP134 4.1 8.0 1.0
O A:HOH1206 4.1 29.5 1.0
O A:HOH1341 4.1 23.3 1.0
CB A:ARG133 4.2 7.9 1.0
CG A:ASN215 4.2 11.7 1.0
O A:THR132 4.3 9.8 1.0
NZ A:LYS128 4.4 23.8 1.0
OD1 A:ASN215 4.4 14.4 1.0
O A:ASP134 4.6 7.4 1.0
OD1 A:ASP134 4.7 11.2 1.0
CG A:ARG133 4.7 9.2 1.0
O A:HOH1353 4.8 29.4 1.0
C A:ASP134 4.8 7.5 1.0
N A:ARG133 4.9 8.1 1.0

Chlorine binding site 4 out of 8 in 1jfx

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Chlorine binding site 4 out of 8 in the Crystal Structure of the Bacterial Lysozyme From Streptomyces Coelicolor at 1.65 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the Bacterial Lysozyme From Streptomyces Coelicolor at 1.65 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1004

b:20.9
occ:1.00
 O A:HOH1173 2.7 4.3 0.5
O A:HOH1306 2.9 24.0 1.0
NH1 A:ARG199 3.3 11.5 1.0
O A:HOH1157 3.3 17.3 1.0
O A:HOH1291 3.5 16.1 0.5
CL A:CL1001 4.2 15.6 1.0
CG2 A:THR2 4.3 8.9 1.0
CZ A:ARG199 4.4 7.4 1.0
O A:HOH1216 4.4 25.5 1.0
NH2 A:ARG199 4.7 9.4 1.0
O A:HOH1119 4.9 18.4 1.0
O A:HOH1348 4.9 32.1 1.0
CB A:THR2 4.9 7.6 1.0
O A:HOH1235 4.9 19.1 1.0

Chlorine binding site 5 out of 8 in 1jfx

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Chlorine binding site 5 out of 8 in the Crystal Structure of the Bacterial Lysozyme From Streptomyces Coelicolor at 1.65 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of the Bacterial Lysozyme From Streptomyces Coelicolor at 1.65 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1006

b:22.1
occ:1.00
 O A:HOH1140 3.0 29.0 1.0
N A:ASN152 3.1 10.4 1.0
O A:HOH1326 3.4 9.7 0.5
CB A:ASN152 3.6 11.5 1.0
CD1 A:TRP151 3.8 9.3 1.0
CA A:ASN152 3.9 9.7 1.0
CA A:TRP151 4.0 11.3 1.0
C A:TRP151 4.0 10.8 1.0
O A:SER150 4.2 12.9 1.0
N A:GLY153 4.5 8.7 1.0
O A:HOH1141 4.5 19.2 1.0
C A:ASN152 4.6 9.3 1.0
NH2 A:ARG117 4.6 10.7 1.0
NH1 A:ARG117 4.6 12.2 1.0
CG A:TRP151 4.7 10.7 1.0
NE1 A:TRP151 4.7 10.8 1.0
CB A:TRP151 4.8 9.1 1.0
CZ A:ARG117 4.9 12.4 1.0
N A:TRP151 4.9 10.9 1.0
C A:SER150 5.0 11.0 1.0

Chlorine binding site 6 out of 8 in 1jfx

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Chlorine binding site 6 out of 8 in the Crystal Structure of the Bacterial Lysozyme From Streptomyces Coelicolor at 1.65 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of the Bacterial Lysozyme From Streptomyces Coelicolor at 1.65 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1007

b:23.0
occ:1.00
 O A:HOH1087 3.1 15.8 1.0
O A:HOH1356 3.2 28.3 1.0
ND2 A:ASN102 3.3 9.5 1.0
CB A:ASN68 3.6 9.9 1.0
CG A:ASN68 3.8 10.4 1.0
C A:TYR109 3.8 9.8 1.0
CA A:TYR109 3.8 8.2 1.0
O A:TYR109 3.8 10.5 1.0
ND2 A:ASN68 4.2 12.3 1.0
OD1 A:ASN68 4.3 9.1 1.0
N A:ALA106 4.3 10.7 1.0
N A:GLY110 4.4 10.2 1.0
CA A:GLY105 4.5 10.9 1.0
CG A:ASN102 4.5 7.1 1.0
CB A:TYR109 4.6 10.6 1.0
O A:ALA106 4.6 10.3 1.0
O A:HOH1081 4.6 13.0 1.0
CD1 A:TYR109 4.7 10.0 1.0
C A:GLY105 4.7 10.5 1.0
O A:HOH1371 4.8 32.6 1.0
O A:SER104 4.8 17.7 1.0
O A:HOH1281 4.8 20.9 1.0
N A:TYR109 4.9 9.7 1.0
O A:HOH1352 5.0 28.0 1.0

Chlorine binding site 7 out of 8 in 1jfx

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Chlorine binding site 7 out of 8 in the Crystal Structure of the Bacterial Lysozyme From Streptomyces Coelicolor at 1.65 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of the Bacterial Lysozyme From Streptomyces Coelicolor at 1.65 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1008

b:22.5
occ:1.00
 O A:HOH1322 2.9 30.8 1.0
O A:HOH1079 3.0 15.0 1.0
OG A:SER70 3.3 14.3 1.0
O A:ALA74 3.4 8.4 1.0
C A:ALA74 3.5 6.9 1.0
CB A:ALA74 3.5 8.3 1.0
CG2 A:THR38 3.6 11.2 1.0
N A:GLN75 3.7 6.5 1.0
CB A:THR38 3.7 9.2 1.0
CG A:GLN75 3.8 7.6 1.0
CB A:SER70 3.9 10.7 1.0
CA A:GLN75 3.9 6.1 1.0
CA A:THR38 3.9 8.3 1.0
O A:HOH1277 4.1 21.6 1.0
CA A:ALA74 4.1 7.5 1.0
CB A:TYR78 4.2 6.1 1.0
O A:HOH1078 4.3 12.5 1.0
CB A:GLN75 4.5 8.0 1.0
O A:THR38 4.6 8.8 1.0
O A:GLY37 4.7 8.2 1.0
C A:THR38 4.8 9.3 1.0
CG A:TYR78 4.8 6.6 1.0
N A:THR38 4.9 8.2 1.0
CD A:GLN75 4.9 6.5 1.0

Chlorine binding site 8 out of 8 in 1jfx

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Chlorine binding site 8 out of 8 in the Crystal Structure of the Bacterial Lysozyme From Streptomyces Coelicolor at 1.65 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of the Bacterial Lysozyme From Streptomyces Coelicolor at 1.65 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1009

b:25.7
occ:1.00
 O A:HOH1116 3.1 15.2 1.0
O A:HOH1023 3.3 7.5 1.0
O A:HOH1345 3.6 26.5 1.0
CA A:ALA25 3.7 9.3 1.0
CB A:ALA25 3.8 7.9 1.0
N A:ALA25 4.5 10.1 1.0
O A:HOH1242 4.6 29.1 1.0
CA A:GLY191 4.7 8.8 1.0
N A:GLY191 4.7 9.4 1.0
O A:SER24 4.8 11.5 1.0
C A:ALA25 4.8 9.7 1.0
C A:SER24 4.9 10.7 1.0
O A:ALA25 4.9 11.8 1.0

Reference:

A.Rau, T.Hogg, R.Marquardt, R.Hilgenfeld. A New Lysozyme Fold. Crystal Structure of the Muramidase From Streptomyces Coelicolor at 1.65 A Resolution. J.Biol.Chem. V. 276 31994 2001.
ISSN: ISSN 0021-9258
PubMed: 11427528
DOI: 10.1074/JBC.M102591200
Page generated: Fri Jul 19 23:01:39 2024

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