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Chlorine in PDB 1jif: Crystal Structure of Bleomycin-Binding Protein From Bleomycin-Producing Streptomyces Verticillus Complexed with Copper(II)-Bleomycin

Protein crystallography data

The structure of Crystal Structure of Bleomycin-Binding Protein From Bleomycin-Producing Streptomyces Verticillus Complexed with Copper(II)-Bleomycin, PDB code: 1jif was solved by M.Sugiyama, T.Kumagai, M.Hayashida, M.Maruyama, Y.Matoba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 35.730, 83.470, 43.060, 90.00, 106.20, 90.00
R / Rfree (%) 15.8 / 20.7

Other elements in 1jif:

The structure of Crystal Structure of Bleomycin-Binding Protein From Bleomycin-Producing Streptomyces Verticillus Complexed with Copper(II)-Bleomycin also contains other interesting chemical elements:

Copper (Cu) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Bleomycin-Binding Protein From Bleomycin-Producing Streptomyces Verticillus Complexed with Copper(II)-Bleomycin (pdb code 1jif). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Bleomycin-Binding Protein From Bleomycin-Producing Streptomyces Verticillus Complexed with Copper(II)-Bleomycin, PDB code: 1jif:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1jif

Go back to Chlorine Binding Sites List in 1jif
Chlorine binding site 1 out of 2 in the Crystal Structure of Bleomycin-Binding Protein From Bleomycin-Producing Streptomyces Verticillus Complexed with Copper(II)-Bleomycin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Bleomycin-Binding Protein From Bleomycin-Producing Streptomyces Verticillus Complexed with Copper(II)-Bleomycin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl502

b:24.6
occ:1.00
O A:HOH613 2.8 26.5 1.0
CU A:CU404 3.1 15.6 1.0
OH3 B:BLM402 3.1 36.2 0.6
NL B:BLM402 3.3 21.4 1.0
NK B:BLM402 3.3 17.8 1.0
NJ B:BLM402 3.4 15.5 1.0
NG B:BLM402 3.4 15.0 1.0
C33 B:BLM402 3.5 17.2 1.0
CD B:BLM402 3.5 34.0 0.4
C29 B:BLM402 3.5 14.4 1.0
C6 B:BLM402 3.6 15.3 1.0
C34 B:BLM402 3.6 18.8 1.0
NC B:BLM402 3.7 11.8 1.0
NH B:BLM402 3.7 12.1 1.0
C7 B:BLM402 3.8 16.4 1.0
C31 B:BLM402 3.9 19.6 1.0
C36 B:BLM402 4.0 20.3 1.0
C38 B:BLM402 4.1 32.6 0.4
C38 B:BLM402 4.2 33.2 0.6
C10 B:BLM402 4.2 13.2 1.0
C27 B:BLM402 4.2 18.2 1.0
C12 B:BLM402 4.3 11.3 1.0
O A:HOH645 4.3 29.8 1.0
C37 B:BLM402 4.3 24.9 1.0
C30 B:BLM402 4.3 15.3 1.0
NE2 A:HIS117 4.4 18.0 1.0
NI B:BLM402 4.4 16.4 1.0
CB B:BLM402 4.5 17.1 1.0
O B:HOH640 4.5 26.5 1.0
C13 B:BLM402 4.5 13.5 1.0
CE1 A:HIS117 4.5 17.4 1.0
OH2 B:BLM402 4.7 21.4 1.0
NE B:BLM402 4.7 11.9 1.0
SG A:CYS115 4.7 16.4 1.0
O4 B:BLM402 4.7 15.6 1.0
O40 B:BLM402 4.8 27.6 1.0
C28 B:BLM402 4.8 16.5 1.0
C14 B:BLM402 5.0 15.2 1.0

Chlorine binding site 2 out of 2 in 1jif

Go back to Chlorine Binding Sites List in 1jif
Chlorine binding site 2 out of 2 in the Crystal Structure of Bleomycin-Binding Protein From Bleomycin-Producing Streptomyces Verticillus Complexed with Copper(II)-Bleomycin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Bleomycin-Binding Protein From Bleomycin-Producing Streptomyces Verticillus Complexed with Copper(II)-Bleomycin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl501

b:20.9
occ:1.00
CU B:CU403 3.0 15.3 1.0
O B:HOH609 3.0 17.0 1.0
NL B:BLM401 3.2 18.2 1.0
NJ B:BLM401 3.2 15.9 1.0
NG B:BLM401 3.3 14.2 1.0
NK B:BLM401 3.4 15.5 1.0
C6 B:BLM401 3.4 15.8 1.0
C33 B:BLM401 3.5 16.9 1.0
C29 B:BLM401 3.5 17.8 1.0
NH B:BLM401 3.6 12.7 1.0
NC B:BLM401 3.6 11.6 1.0
C7 B:BLM401 3.7 18.6 1.0
C34 B:BLM401 3.7 15.1 1.0
CD B:BLM401 3.8 23.9 0.7
C38 B:BLM401 3.9 28.5 0.3
C38 B:BLM401 4.0 29.8 0.7
C36 B:BLM401 4.0 19.9 1.0
C31 B:BLM401 4.0 14.3 1.0
C10 B:BLM401 4.1 13.5 1.0
OH3 B:BLM401 4.1 23.9 0.3
C12 B:BLM401 4.1 19.5 1.0
C37 B:BLM401 4.2 24.5 1.0
C27 B:BLM401 4.2 17.0 1.0
O B:HOH631 4.2 26.4 1.0
C30 B:BLM401 4.4 19.7 1.0
O B:HOH618 4.4 22.8 1.0
C13 B:BLM401 4.5 14.4 1.0
NI B:BLM401 4.5 16.8 1.0
CB B:BLM401 4.5 15.1 1.0
NE2 B:HIS317 4.5 14.2 1.0
NE B:BLM401 4.6 13.6 1.0
CE1 B:HIS317 4.7 13.9 1.0
OH2 B:BLM401 4.7 18.7 1.0
SG B:CYS315 4.7 17.2 1.0
O40 B:BLM401 4.8 19.6 1.0
O4 B:BLM401 4.8 20.2 1.0
C5 B:BLM401 4.9 15.6 1.0
C28 B:BLM401 4.9 16.1 1.0
C9 B:BLM401 5.0 11.5 1.0
C14 B:BLM401 5.0 15.1 1.0
C40 B:BLM401 5.0 20.9 1.0

Reference:

M.Sugiyama, T.Kumagai, M.Hayashida, M.Maruyama, Y.Matoba. The 1.6-A Crystal Structure of the Copper(II)-Bound Bleomycin Complexed with the Bleomycin-Binding Protein From Bleomycin-Producing Streptomyces Verticillus. J.Biol.Chem. V. 277 2311 2002.
ISSN: ISSN 0021-9258
PubMed: 11706014
DOI: 10.1074/JBC.M103278200
Page generated: Sat Dec 12 08:38:50 2020

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