Atomistry » Chlorine » PDB 1jfv-1k6x » 1k2x
Atomistry »
  Chlorine »
    PDB 1jfv-1k6x »
      1k2x »

Chlorine in PDB 1k2x: Crystal Structure of Putative Asparaginase Encoded By Escherichia Coli Ybik Gene

Enzymatic activity of Crystal Structure of Putative Asparaginase Encoded By Escherichia Coli Ybik Gene

All present enzymatic activity of Crystal Structure of Putative Asparaginase Encoded By Escherichia Coli Ybik Gene:
3.5.1.1;

Protein crystallography data

The structure of Crystal Structure of Putative Asparaginase Encoded By Escherichia Coli Ybik Gene, PDB code: 1k2x was solved by D.Borek, M.Jaskolski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.50 / 1.65
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 50.296, 77.624, 148.152, 90.00, 90.00, 90.00
R / Rfree (%) 16.3 / 19.8

Other elements in 1k2x:

The structure of Crystal Structure of Putative Asparaginase Encoded By Escherichia Coli Ybik Gene also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Putative Asparaginase Encoded By Escherichia Coli Ybik Gene (pdb code 1k2x). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 9 binding sites of Chlorine where determined in the Crystal Structure of Putative Asparaginase Encoded By Escherichia Coli Ybik Gene, PDB code: 1k2x:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Chlorine binding site 1 out of 9 in 1k2x

Go back to Chlorine Binding Sites List in 1k2x
Chlorine binding site 1 out of 9 in the Crystal Structure of Putative Asparaginase Encoded By Escherichia Coli Ybik Gene


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Putative Asparaginase Encoded By Escherichia Coli Ybik Gene within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl803

b:21.3
occ:1.00
 O A:HOH883 3.2 27.1 1.0
O A:HOH906 3.3 28.4 1.0
NE2 A:GLN23 3.3 10.9 1.0
CD2 A:LEU22 3.8 7.5 1.0
CG A:GLN23 4.0 10.1 1.0
CD A:GLN23 4.2 11.0 1.0
CG A:LEU22 4.4 8.2 1.0
CB A:LEU22 4.4 9.2 1.0
N A:GLN23 5.0 9.5 1.0

Chlorine binding site 2 out of 9 in 1k2x

Go back to Chlorine Binding Sites List in 1k2x
Chlorine binding site 2 out of 9 in the Crystal Structure of Putative Asparaginase Encoded By Escherichia Coli Ybik Gene


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Putative Asparaginase Encoded By Escherichia Coli Ybik Gene within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl808

b:50.9
occ:1.00
 N A:SER147 3.1 12.9 1.0
O A:HOH916 3.4 30.1 1.0
CA A:THR146 3.6 10.1 1.0
OG A:SER147 3.6 16.9 1.0
C A:THR146 3.8 11.2 1.0
O A:HOH934 3.9 34.6 1.0
CB A:THR146 3.9 10.0 1.0
CB A:SER147 4.0 14.4 1.0
CA A:SER147 4.2 14.2 1.0
CG2 A:THR146 4.4 10.4 1.0
O A:HOH1015 4.5 42.4 1.0
O A:SER145 4.7 7.9 1.0
N A:THR146 4.8 9.0 1.0
N A:LEU148 5.0 15.7 1.0

Chlorine binding site 3 out of 9 in 1k2x

Go back to Chlorine Binding Sites List in 1k2x
Chlorine binding site 3 out of 9 in the Crystal Structure of Putative Asparaginase Encoded By Escherichia Coli Ybik Gene


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Putative Asparaginase Encoded By Escherichia Coli Ybik Gene within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl810

b:34.2
occ:1.00
 O A:HOH1038 2.8 41.8 1.0
N B:GLU293 3.2 10.0 1.0
N A:ALA14 3.5 13.6 1.0
CB B:THR292 3.6 8.8 1.0
CA A:ALA14 3.6 14.8 1.0
C A:GLY13 3.6 11.8 1.0
CG B:GLU293 3.6 14.8 1.0
O A:GLY13 3.7 11.0 1.0
CA B:THR292 3.7 9.1 1.0
CB A:ALA14 3.9 15.0 1.0
CB B:GLU293 3.9 11.2 1.0
CG2 B:THR292 3.9 9.7 1.0
C B:THR292 4.0 9.4 1.0
OE2 B:GLU293 4.0 24.7 1.0
CD B:GLU293 4.1 19.4 1.0
CA B:GLU293 4.2 10.6 1.0
CA A:GLY13 4.4 10.8 1.0
OG1 B:THR292 4.9 7.4 1.0
OE1 B:GLU293 5.0 22.0 1.0
C A:ALA14 5.0 16.2 1.0

Chlorine binding site 4 out of 9 in 1k2x

Go back to Chlorine Binding Sites List in 1k2x
Chlorine binding site 4 out of 9 in the Crystal Structure of Putative Asparaginase Encoded By Escherichia Coli Ybik Gene


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Putative Asparaginase Encoded By Escherichia Coli Ybik Gene within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl811

b:60.9
occ:1.00
 O A:HOH841 3.1 18.7 1.0
O A:HOH912 3.4 26.8 1.0
CB A:ARG104 3.6 6.7 1.0
CG1 A:VAL139 3.7 10.6 1.0
CD A:ARG104 3.9 9.1 1.0
CB A:GLU137 3.9 11.6 1.0
OE1 A:GLU137 4.0 22.4 1.0
O A:HOH877 4.1 23.0 1.0
CG A:ARG104 4.3 7.6 1.0
O A:HOH849 4.3 19.9 1.0
O A:HOH924 4.5 40.3 1.0
O A:GLU137 4.6 11.5 1.0
CD A:GLU137 4.6 18.2 1.0
CG A:GLU137 4.7 14.7 1.0
CA A:GLU137 4.9 11.0 1.0
C A:GLU137 4.9 11.2 1.0
CA A:ARG104 4.9 6.7 1.0
N A:ARG104 5.0 6.9 1.0

Chlorine binding site 5 out of 9 in 1k2x

Go back to Chlorine Binding Sites List in 1k2x
Chlorine binding site 5 out of 9 in the Crystal Structure of Putative Asparaginase Encoded By Escherichia Coli Ybik Gene


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Putative Asparaginase Encoded By Escherichia Coli Ybik Gene within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl804

b:21.3
occ:1.00
 NE2 C:GLN23 3.2 9.5 1.0
CD2 C:LEU22 3.9 6.2 1.0
CG C:GLN23 4.0 8.3 1.0
CB C:LEU22 4.0 6.6 1.0
CD C:GLN23 4.1 9.6 1.0
CG C:LEU22 4.2 6.6 1.0
N C:GLN23 4.6 6.6 1.0

Chlorine binding site 6 out of 9 in 1k2x

Go back to Chlorine Binding Sites List in 1k2x
Chlorine binding site 6 out of 9 in the Crystal Structure of Putative Asparaginase Encoded By Escherichia Coli Ybik Gene


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Putative Asparaginase Encoded By Escherichia Coli Ybik Gene within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl807

b:40.1
occ:1.00
 O C:HOH897 3.0 32.5 1.0
NH1 C:ARG104 3.1 16.0 1.0
O C:HOH859 3.5 28.8 1.0
CG1 C:VAL139 3.5 10.9 1.0
CD C:ARG104 3.6 10.9 1.0
OE1 C:GLU137 3.8 25.6 1.0
CZ C:ARG104 4.1 14.0 1.0
CD1 C:ILE143 4.1 12.2 0.5
CD1 C:ILE143 4.2 13.8 0.5
NE C:ARG104 4.3 11.3 1.0
CD C:GLU137 4.3 21.1 1.0
CG C:ARG104 4.4 9.1 1.0
O C:HOH969 4.5 40.6 1.0
CB C:ARG104 4.5 7.6 1.0
OE2 C:GLU137 4.7 24.6 1.0
CB C:VAL139 4.8 10.3 1.0

Chlorine binding site 7 out of 9 in 1k2x

Go back to Chlorine Binding Sites List in 1k2x
Chlorine binding site 7 out of 9 in the Crystal Structure of Putative Asparaginase Encoded By Escherichia Coli Ybik Gene


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Putative Asparaginase Encoded By Escherichia Coli Ybik Gene within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl809

b:38.5
occ:1.00
 N C:SER147 3.2 12.0 1.0
O C:HOH836 3.3 21.9 1.0
OG C:SER147 3.4 17.3 1.0
CA C:THR146 3.6 10.2 1.0
CB C:THR146 3.8 10.2 1.0
C C:THR146 3.9 11.0 1.0
O C:HOH865 3.9 28.5 1.0
CB C:SER147 4.1 13.4 1.0
CA C:SER147 4.2 13.1 1.0
CG2 C:THR146 4.4 10.0 1.0
O C:SER145 4.7 8.6 1.0
O C:HOH937 4.7 49.0 1.0
O C:HOH845 4.8 25.5 1.0
N C:THR146 4.8 9.3 1.0

Chlorine binding site 8 out of 9 in 1k2x

Go back to Chlorine Binding Sites List in 1k2x
Chlorine binding site 8 out of 9 in the Crystal Structure of Putative Asparaginase Encoded By Escherichia Coli Ybik Gene


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Putative Asparaginase Encoded By Escherichia Coli Ybik Gene within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl805

b:30.8
occ:1.00
 NE D:ARG262 3.2 11.7 1.0
NH2 D:ARG262 3.3 14.0 1.0
NZ D:LYS267 3.3 10.1 1.0
O B:HOH356 3.4 34.3 1.0
CE1 B:TYR251 3.6 6.2 1.0
OH B:TYR251 3.7 6.1 1.0
CZ D:ARG262 3.7 12.8 1.0
CD D:LYS267 3.7 10.7 1.0
CE D:LYS267 3.8 13.1 1.0
CZ B:TYR251 4.1 6.1 1.0
CD2 D:LEU248 4.3 8.6 1.0
CD D:ARG262 4.3 10.8 1.0
CG D:ARG262 4.3 9.5 1.0
CG D:LYS267 4.6 9.6 1.0
CD1 B:TYR251 4.7 6.0 1.0
O D:HOH833 4.8 29.2 1.0
NH1 D:ARG262 5.0 12.2 1.0

Chlorine binding site 9 out of 9 in 1k2x

Go back to Chlorine Binding Sites List in 1k2x
Chlorine binding site 9 out of 9 in the Crystal Structure of Putative Asparaginase Encoded By Escherichia Coli Ybik Gene


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of Putative Asparaginase Encoded By Escherichia Coli Ybik Gene within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl806

b:31.2
occ:1.00
 N D:GLU293 3.2 9.5 1.0
O C:HOH928 3.3 20.2 1.0
O D:HOH870 3.4 46.4 1.0
CB D:THR292 3.6 8.9 1.0
CA D:THR292 3.8 9.1 1.0
CB D:GLU293 3.9 10.1 1.0
CG2 D:THR292 3.9 9.8 1.0
C D:THR292 4.0 9.2 1.0
O C:HOH949 4.0 37.2 1.0
CA D:GLU293 4.1 9.9 1.0
O C:GLY13 4.2 18.5 1.0
CA C:GLY13 4.4 14.4 1.0
C C:GLY13 4.7 16.8 1.0
OG1 D:THR292 4.9 8.1 1.0
O C:ILE15 5.0 18.5 1.0
N D:GLY294 5.0 8.8 1.0

Reference:

K.Michalska, D.Borek, A.Hernandez-Santoyo, M.Jaskolski. Crystal Packing of Plant-Type L-Asparaginase From Escherichia Coli. Acta Crystallogr.,Sect.D V. 64 309 2008.
ISSN: ISSN 0907-4449
PubMed: 18323626
DOI: 10.1107/S0907444907068072
Page generated: Sat Dec 12 08:39:19 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy