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Chlorine in PDB 1k3b: Crystal Structure of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added to An Endopeptidase Framework Creates the Machine For Activation of Granular Serine Proteases

Enzymatic activity of Crystal Structure of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added to An Endopeptidase Framework Creates the Machine For Activation of Granular Serine Proteases

All present enzymatic activity of Crystal Structure of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added to An Endopeptidase Framework Creates the Machine For Activation of Granular Serine Proteases:
3.4.14.1;

Protein crystallography data

The structure of Crystal Structure of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added to An Endopeptidase Framework Creates the Machine For Activation of Granular Serine Proteases, PDB code: 1k3b was solved by D.Turk, V.Janjic, I.Stern, M.Podobnik, D.Lamba, S.W.Dahl, C.Lauritzen, J.Pedersen, V.Turk, B.Turk, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.15
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 87.154, 88.031, 114.609, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 23.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added to An Endopeptidase Framework Creates the Machine For Activation of Granular Serine Proteases (pdb code 1k3b). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added to An Endopeptidase Framework Creates the Machine For Activation of Granular Serine Proteases, PDB code: 1k3b:

Chlorine binding site 1 out of 1 in 1k3b

Go back to Chlorine Binding Sites List in 1k3b
Chlorine binding site 1 out of 1 in the Crystal Structure of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added to An Endopeptidase Framework Creates the Machine For Activation of Granular Serine Proteases


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added to An Endopeptidase Framework Creates the Machine For Activation of Granular Serine Proteases within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl500

b:10.0
occ:1.00
 O C:HOH1160 3.2 39.1 1.0
N B:TYR280 3.2 10.0 1.0
OH B:TYR323 3.3 5.8 1.0
O C:HOH1022 3.3 23.7 1.0
CB B:TYR280 3.5 6.4 1.0
CB B:PHE278 3.6 11.0 1.0
CE1 B:TYR323 3.6 9.8 1.0
CG2 C:VAL431 3.6 10.8 1.0
CD B:PRO279 3.6 12.5 1.0
N B:PRO279 3.7 12.6 1.0
CD1 C:ILE429 3.9 11.7 1.0
CZ B:TYR323 3.9 10.2 1.0
CA B:TYR280 4.0 9.0 1.0
CD2 B:PHE278 4.0 11.8 1.0
C B:PHE278 4.0 13.5 1.0
CG1 C:ILE429 4.1 14.2 1.0
CA B:PHE278 4.1 13.2 1.0
C B:PRO279 4.2 11.8 1.0
CG B:PHE278 4.3 13.2 1.0
CA B:PRO279 4.3 11.3 1.0
CB B:PRO279 4.3 11.8 1.0
CG B:PRO279 4.5 12.7 1.0
O B:PHE278 4.7 15.0 1.0
CD1 B:TYR323 4.8 7.9 1.0
CG B:TYR280 4.8 8.5 1.0
CB C:VAL431 4.9 11.8 1.0
CG2 A:ILE63 5.0 8.1 1.0

Reference:

D.Turk, V.Janjic, I.Stern, M.Podobnik, D.Lamba, S.W.Dahl, C.Lauritzen, J.Pedersen, V.Turk, B.Turk. Structure of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added to An Endopeptidase Framework Creates the Machine For Activation of Granular Serine Proteases. Embo J. V. 20 6570 2001.
ISSN: ISSN 0261-4189
PubMed: 11726493
DOI: 10.1093/EMBOJ/20.23.6570
Page generated: Sat Dec 12 08:39:20 2020

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