Atomistry » Chlorine » PDB 1jfv-1k6x » 1k63
Atomistry »
  Chlorine »
    PDB 1jfv-1k6x »
      1k63 »

Chlorine in PDB 1k63: Complex of Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas Paucimobilis with UT26 2-Bromo-2-Propene-1-Ol at 1.8A Resolution

Enzymatic activity of Complex of Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas Paucimobilis with UT26 2-Bromo-2-Propene-1-Ol at 1.8A Resolution

All present enzymatic activity of Complex of Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas Paucimobilis with UT26 2-Bromo-2-Propene-1-Ol at 1.8A Resolution:
3.8.1.5;

Protein crystallography data

The structure of Complex of Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas Paucimobilis with UT26 2-Bromo-2-Propene-1-Ol at 1.8A Resolution, PDB code: 1k63 was solved by V.A.Streltsov, J.Damborsky, M.C.J.Wilce, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.80 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.180, 68.951, 80.681, 90.00, 90.00, 90.00
R / Rfree (%) 14.1 / 20

Other elements in 1k63:

The structure of Complex of Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas Paucimobilis with UT26 2-Bromo-2-Propene-1-Ol at 1.8A Resolution also contains other interesting chemical elements:

Bromine (Br) 4 atoms
Magnesium (Mg) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Complex of Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas Paucimobilis with UT26 2-Bromo-2-Propene-1-Ol at 1.8A Resolution (pdb code 1k63). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Complex of Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas Paucimobilis with UT26 2-Bromo-2-Propene-1-Ol at 1.8A Resolution, PDB code: 1k63:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1k63

Go back to Chlorine Binding Sites List in 1k63
Chlorine binding site 1 out of 2 in the Complex of Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas Paucimobilis with UT26 2-Bromo-2-Propene-1-Ol at 1.8A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Complex of Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas Paucimobilis with UT26 2-Bromo-2-Propene-1-Ol at 1.8A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1003

b:21.8
occ:0.40
 BR A:BR1001 0.4 19.8 0.6
NE1 A:TRP109 3.2 4.8 1.0
N A:PRO208 3.3 5.8 1.0
O A:BRP2001 3.3 54.3 0.5
CA A:PRO208 3.3 4.6 1.0
ND2 A:ASN38 3.4 4.6 1.0
C A:TRP207 3.5 7.7 1.0
CD A:PRO208 3.5 4.2 1.0
CB A:TRP207 3.7 5.3 1.0
O A:TRP207 3.7 3.6 1.0
C3 A:BRP2001 3.7 57.5 0.5
CB A:PRO208 3.7 3.6 1.0
CZ A:PHE169 3.8 6.2 1.0
CD1 A:TRP109 3.8 3.7 1.0
CD1 A:ILE211 3.9 4.1 1.0
O A:BRP2002 4.0 52.5 0.5
CE2 A:PHE169 4.0 8.2 1.0
CB A:ASN38 4.0 6.3 1.0
CG1 A:ILE211 4.2 1.9 1.0
CG A:ASN38 4.2 11.1 1.0
O A:HOH2003 4.2 30.1 1.0
CA A:TRP207 4.2 8.2 1.0
CG A:PRO208 4.3 5.8 1.0
CE2 A:PHE151 4.3 6.8 1.0
CE2 A:TRP109 4.5 5.0 1.0
C A:PRO208 4.7 6.3 1.0
CG A:TRP207 4.8 3.0 1.0
CE1 A:PHE169 4.8 6.3 1.0
C2 A:BRP2001 4.9 57.9 0.5

Chlorine binding site 2 out of 2 in 1k63

Go back to Chlorine Binding Sites List in 1k63
Chlorine binding site 2 out of 2 in the Complex of Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas Paucimobilis with UT26 2-Bromo-2-Propene-1-Ol at 1.8A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Complex of Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas Paucimobilis with UT26 2-Bromo-2-Propene-1-Ol at 1.8A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1004

b:23.7
occ:0.60
 BR A:BR1002 0.7 16.6 0.4
O A:HOH2340 2.6 24.3 1.0
N A:ALA218 3.1 8.5 1.0
CG2 A:THR216 3.2 15.8 1.0
CA A:PRO217 3.7 7.1 1.0
C A:PRO217 3.9 10.0 1.0
CB A:ALA218 3.9 12.4 1.0
CB A:THR216 4.1 14.3 1.0
CA A:THR216 4.1 8.6 1.0
CA A:ALA218 4.1 8.1 1.0
OG1 A:THR216 4.3 28.3 1.0
O A:GLY215 4.4 11.6 1.0
CB A:PRO217 4.6 8.8 1.0
N A:PRO217 4.7 7.2 1.0
C A:THR216 5.0 8.3 1.0

Reference:

V.A.Streltsov, Z.Prokop, J.Damborsky, Y.Nagata, A.Oakley, M.C.J.Wilce. Haloalkane Dehalogenase Linb From Sphingomonas Paucimobilis UT26: X-Ray Crystallographic Studies of Dehalogenation of Brominated Substrates Biochemistry V. 42 10104 2003.
ISSN: ISSN 0006-2960
PubMed: 12939138
DOI: 10.1021/BI027280A
Page generated: Sat Dec 12 08:39:22 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy