Atomistry » Chlorine » PDB 1k73-1ktw » 1kcc
Atomistry »
  Chlorine »
    PDB 1k73-1ktw »
      1kcc »

Chlorine in PDB 1kcc: Endopolygalacturonase I From Stereum Purpureum Complexed with A Galacturonate at 1.00 A Resolution.

Enzymatic activity of Endopolygalacturonase I From Stereum Purpureum Complexed with A Galacturonate at 1.00 A Resolution.

All present enzymatic activity of Endopolygalacturonase I From Stereum Purpureum Complexed with A Galacturonate at 1.00 A Resolution.:
3.2.1.15;

Protein crystallography data

The structure of Endopolygalacturonase I From Stereum Purpureum Complexed with A Galacturonate at 1.00 A Resolution., PDB code: 1kcc was solved by T.Shimizu, T.Nakatsu, K.Miyairi, T.Okuno, H.Kato, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.00
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 46.515, 52.138, 37.187, 72.31, 69.09, 70.35
R / Rfree (%) 11.4 / 14

Other elements in 1kcc:

The structure of Endopolygalacturonase I From Stereum Purpureum Complexed with A Galacturonate at 1.00 A Resolution. also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Endopolygalacturonase I From Stereum Purpureum Complexed with A Galacturonate at 1.00 A Resolution. (pdb code 1kcc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Endopolygalacturonase I From Stereum Purpureum Complexed with A Galacturonate at 1.00 A Resolution., PDB code: 1kcc:

Chlorine binding site 1 out of 1 in 1kcc

Go back to Chlorine Binding Sites List in 1kcc
Chlorine binding site 1 out of 1 in the Endopolygalacturonase I From Stereum Purpureum Complexed with A Galacturonate at 1.00 A Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Endopolygalacturonase I From Stereum Purpureum Complexed with A Galacturonate at 1.00 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl2003

b:9.4
occ:1.00
OG1 A:THR55 3.1 10.5 1.0
N A:THR55 3.3 7.4 1.0
N A:GLY30 3.4 10.2 1.0
CA A:GLY30 3.7 11.5 1.0
OG1 A:THR54 3.7 7.7 1.0
CB A:THR55 3.8 8.5 1.0
CG2 A:THR55 3.8 9.4 1.0
C A:ALA29 4.0 8.6 1.0
CB A:ALA29 4.0 9.6 1.0
CA A:THR54 4.0 6.7 1.0
CA A:THR55 4.1 7.8 1.0
C A:THR54 4.1 6.9 1.0
CA A:ALA29 4.4 8.6 1.0
CB A:THR54 4.5 7.1 1.0
N A:LEU56 4.6 8.2 1.0
O A:ALA29 4.7 10.8 1.0
C A:THR55 4.7 7.8 1.0
O A:HOH2215 4.9 24.1 1.0

Reference:

T.Shimizu, T.Nakatsu, K.Miyairi, T.Okuno, H.Kato. Active-Site Architecture of Endopolygalacturonase I From Stereum Purpureum Revealed By Crystal Structures in Native and Ligand-Bound Forms at Atomic Resolution. Biochemistry V. 41 6651 2002.
ISSN: ISSN 0006-2960
PubMed: 12022868
DOI: 10.1021/BI025541A
Page generated: Sat Dec 12 08:39:52 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy