Chlorine in PDB 1kji: Crystal Structure of Glycinamide Ribonucleotide Transformylase in Complex with Mg-Amppcp

The structure of Crystal Structure of Glycinamide Ribonucleotide Transformylase in Complex with Mg-Amppcp, PDB code: 1kji was solved by J.B.Thoden, S.M.Firestine, S.J.Benkovic, H.M.Holden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.60
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	62.200, 179.200, 76.200, 90.00, 90.00, 90.00
R / Rfree (%)	n/a / n/a

The structure of Crystal Structure of Glycinamide Ribonucleotide Transformylase in Complex with Mg-Amppcp also contains other interesting chemical elements:

Magnesium	(Mg)	4 atoms
Sodium	(Na)	3 atoms

The binding sites of Chlorine atom in the Crystal Structure of Glycinamide Ribonucleotide Transformylase in Complex with Mg-Amppcp (pdb code 1kji). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Glycinamide Ribonucleotide Transformylase in Complex with Mg-Amppcp, PDB code: 1kji:

Chlorine binding site 1 out of 1 in the Crystal Structure of Glycinamide Ribonucleotide Transformylase in Complex with Mg-Amppcp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Glycinamide Ribonucleotide Transformylase in Complex with Mg-Amppcp within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl397 b:25.2 occ:1.00 O A:HOH590 3.0 28.2 1.0 O A:HOH452 3.1 26.4 1.0 N A:PHE134 3.3 18.0 1.0 NH2 A:ARG119 3.3 19.9 1.0 CA A:ARG133 3.6 17.9 1.0 CD2 A:PHE134 3.7 17.7 1.0 NH1 A:ARG119 4.0 17.1 1.0 C A:ARG133 4.0 16.8 1.0 CZ A:ARG119 4.1 19.6 1.0 CB A:PHE134 4.1 16.0 1.0 CA A:PHE134 4.3 15.8 1.0 CB A:ARG133 4.3 17.7 1.0 CG A:PHE134 4.4 17.3 1.0 CG A:ARG133 4.4 12.8 1.0 O A:PHE134 4.5 22.4 1.0 O A:TYR132 4.6 20.5 1.0 N A:ARG133 4.7 19.8 1.0 CE2 A:PHE134 4.7 18.5 1.0 CD1 A:TYR132 4.8 18.7 1.0 O A:HOH668 4.8 31.6 1.0 CE1 A:TYR132 4.8 15.1 1.0 C A:PHE134 4.9 24.1 1.0

J.B.Thoden, S.M.Firestine, S.J.Benkovic, H.M.Holden. Purt-Encoded Glycinamide Ribonucleotide Transformylase. Accommodation of Adenosine Nucleotide Analogs Within the Active Site. J.Biol.Chem. V. 277 23898 2002.
ISSN: ISSN 0021-9258
PubMed: 11953435
DOI: 10.1074/JBC.M202251200