Chlorine in PDB 1ljm: Dna Recognition Is Mediated By Conformational Transition and By Dna Bending

The structure of Dna Recognition Is Mediated By Conformational Transition and By Dna Bending, PDB code: 1ljm was solved by D.Bartfeld, L.Shimon, G.C.Couture, D.Rabinovich, F.Frolow, D.Levanon, Y.Groner, Z.Shakked, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.00 / 2.50
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	121.230, 121.230, 186.330, 90.00, 90.00, 120.00
R / Rfree (%)	19.3 / 24.9

The binding sites of Chlorine atom in the Dna Recognition Is Mediated By Conformational Transition and By Dna Bending (pdb code 1ljm). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Dna Recognition Is Mediated By Conformational Transition and By Dna Bending, PDB code: 1ljm:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in the Dna Recognition Is Mediated By Conformational Transition and By Dna Bending


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Dna Recognition Is Mediated By Conformational Transition and By Dna Bending within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl4003 b:53.6 occ:1.00 O A:HOH3096 3.1 47.5 1.0 N A:GLU1116 3.2 32.4 1.0 CA A:GLY1138 3.4 29.4 1.0 CA A:ALA1115 3.6 27.9 1.0 O A:HOH3199 3.6 44.1 1.0 ND2 A:ASN1112 3.8 66.1 1.0 CB A:ALA1115 3.8 17.6 1.0 C A:ALA1115 3.9 31.1 1.0 CB A:GLU1116 4.1 32.5 1.0 CA A:GLU1116 4.2 34.0 1.0 N A:GLY1138 4.2 26.0 1.0 OD1 A:ASN1112 4.4 54.1 1.0 C A:GLY1138 4.4 34.1 1.0 CG A:ASN1112 4.5 60.9 1.0 N A:ARG1139 4.8 37.6 1.0 N A:ALA1115 4.9 34.1 1.0

Chlorine binding site 2 out of 5 in the Dna Recognition Is Mediated By Conformational Transition and By Dna Bending


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Dna Recognition Is Mediated By Conformational Transition and By Dna Bending within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl4001 b:38.9 occ:1.00 ND2 B:ASN2155 3.1 29.1 1.0 CB B:ASN2155 3.9 29.3 1.0 CG B:ASN2155 4.0 29.5 1.0

Chlorine binding site 3 out of 5 in the Dna Recognition Is Mediated By Conformational Transition and By Dna Bending


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Dna Recognition Is Mediated By Conformational Transition and By Dna Bending within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl4002 b:40.8 occ:1.00 O B:HOH3056 3.0 28.9 1.0 NE2 B:GLN2158 3.4 33.8 1.0 O B:HOH3091 3.4 41.2 1.0 CG1 B:VAL2097 3.7 33.9 1.0 CA B:GLY2095 3.8 46.9 1.0 CB B:ASN2069 4.0 19.8 1.0 CG B:ASN2069 4.0 29.9 1.0 O B:GLY2095 4.1 48.9 1.0 ND2 B:ASN2069 4.1 34.6 1.0 C B:GLY2095 4.1 48.6 1.0 OE1 B:GLN2158 4.1 28.6 1.0 CD B:GLN2158 4.2 25.9 1.0 N B:GLY2095 4.3 47.5 1.0 CZ B:PHE2070 4.3 20.9 1.0 OD1 B:ASN2069 4.5 35.3 1.0 CE1 B:PHE2070 4.8 24.0 1.0 N B:ASP2096 4.9 46.8 1.0

Chlorine binding site 4 out of 5 in the Dna Recognition Is Mediated By Conformational Transition and By Dna Bending


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Dna Recognition Is Mediated By Conformational Transition and By Dna Bending within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl4004 b:39.5 occ:1.00 N B:GLU2116 3.2 28.4 1.0 ND2 B:ASN2112 3.2 50.0 1.0 O B:HOH3134 3.5 50.9 1.0 CA B:GLY2138 3.6 35.5 1.0 CA B:ALA2115 3.6 25.9 1.0 C B:ALA2115 3.9 27.9 1.0 CB B:ALA2115 4.0 28.9 1.0 CB B:GLU2116 4.0 20.9 1.0 CA B:GLU2116 4.2 25.6 1.0 CG B:ASN2112 4.4 47.7 1.0 N B:GLY2138 4.4 40.1 1.0 C B:GLY2138 4.5 40.3 1.0 OD1 B:ASN2112 4.7 56.2 1.0 O B:HOH3070 4.7 35.5 1.0 N B:ALA2115 4.8 35.0 1.0 O B:SER2114 4.8 33.7 1.0 N B:ARG2139 4.8 38.3 1.0

Chlorine binding site 5 out of 5 in the Dna Recognition Is Mediated By Conformational Transition and By Dna Bending


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Dna Recognition Is Mediated By Conformational Transition and By Dna Bending within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl4005 b:45.0 occ:1.00 N B:VAL2170 3.2 40.6 1.0 CG2 B:VAL2170 3.4 48.4 1.0 CD B:ARG2142 3.4 59.5 1.0 O B:HOH3116 3.4 47.4 1.0 CB B:THR2169 3.5 38.2 1.0 CA B:THR2169 3.6 40.4 1.0 C B:THR2169 3.9 40.4 1.0 CG2 B:THR2169 3.9 37.8 1.0 NE B:ARG2139 3.9 57.9 1.0 CB B:VAL2170 4.0 36.9 1.0 NE B:ARG2142 4.1 53.7 1.0 CA B:VAL2170 4.2 42.7 1.0 NH2 B:ARG2139 4.3 46.3 1.0 CG B:ARG2142 4.4 55.1 1.0 CB B:ARG2139 4.4 48.9 1.0 CZ B:ARG2139 4.5 50.5 1.0 CG B:ARG2139 4.6 57.6 1.0 CD B:ARG2139 4.7 62.5 1.0 OG1 B:THR2169 4.8 32.5 1.0 O B:ILE2168 4.8 42.0 1.0 CA B:GLY2141 4.9 58.2 1.0 N B:THR2169 4.9 41.0 1.0 C B:GLY2141 4.9 63.1 1.0

D.Bartfeld, L.Shimon, G.Couture, D.Rabinovich, F.Frolow, D.Levanon, Y.Groner, Z.Shakked. Dna Recognition By the RUNX1 Transcription Factor Is Mediated By An Allosteric Transition in the Runt Domain and By Dna Bending. Structure V. 10 1395.
ISSN: ISSN 0969-2126
PubMed: 12377125
DOI: 10.1016/S0969-2126(02)00853-5