Chlorine in PDB 1m5p: Transition State Stabilization By A Catalytic Rna

The structure of Transition State Stabilization By A Catalytic Rna, PDB code: 1m5p was solved by P.B.Rupert, A.Massey, S.T.Sigurdsson, A.R.Ferre-D'amare, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.70 / 2.60
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	259.800, 44.300, 102.400, 90.00, 107.00, 90.00
R / Rfree (%)	22.3 / 28

The structure of Transition State Stabilization By A Catalytic Rna also contains other interesting chemical elements:

Calcium

(Ca)

26 atoms

The binding sites of Chlorine atom in the Transition State Stabilization By A Catalytic Rna (pdb code 1m5p). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Transition State Stabilization By A Catalytic Rna, PDB code: 1m5p:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Transition State Stabilization By A Catalytic Rna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Transition State Stabilization By A Catalytic Rna within 5.0Å range: probe atom residue distance (Å) B Occ M:Cl13 b:73.1 occ:1.00 CL5' M:5CG13 0.0 73.1 1.0 C5' M:5CG13 1.4 91.1 1.0 C4' M:5CG13 2.5 82.7 1.0 C3' M:5CG13 2.8 75.4 1.0 OP2 M:U14 3.3 84.8 1.0 O3' A:A12 3.6 71.2 1.0 O4' M:5CG13 3.7 96.3 1.0 O3' M:5CG13 3.7 65.3 1.0 C2' M:5CG13 3.8 75.1 1.0 P M:U14 4.1 88.0 1.0 C5 M:U14 4.2 81.5 1.0 O2' A:A12 4.2 0.9 1.0 C1' M:5CG13 4.3 84.7 1.0 O5' M:U14 4.5 71.1 1.0 C6 M:U14 4.6 83.7 1.0 C3' A:A12 4.7 86.8 1.0 N1 B:A57 4.8 80.7 1.0 N3 M:5CG13 4.9 98.3 1.0

Chlorine binding site 2 out of 2 in the Transition State Stabilization By A Catalytic Rna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Transition State Stabilization By A Catalytic Rna within 5.0Å range: probe atom residue distance (Å) B Occ P:Cl13 b:87.7 occ:1.00 CL5' P:5CG13 0.0 87.7 1.0 C5' P:5CG13 1.4 84.8 1.0 C4' P:5CG13 2.5 67.9 1.0 C3' P:5CG13 3.0 54.3 1.0 OP2 P:U14 3.3 73.8 1.0 O3' D:A12 3.5 95.0 1.0 O2' D:A12 3.6 96.3 1.0 O4' P:5CG13 3.7 76.0 1.0 O3' P:5CG13 3.8 63.7 1.0 C2' P:5CG13 4.1 63.9 1.0 P P:U14 4.1 86.8 1.0 C5 P:U14 4.1 91.6 1.0 O5' P:U14 4.5 79.5 1.0 C1' P:5CG13 4.5 73.5 1.0 C6 P:U14 4.6 93.3 1.0 C3' D:A12 4.6 76.0 1.0 C2' D:A12 4.7 88.7 1.0 N2 E:G8 4.7 0.0 1.0 N1 E:A57 4.8 75.8 1.0

P.B.Rupert, A.P.Massey, S.T.Sigurdsson, A.R.Ferre-D'amare. Transition State Stabilization By A Catalytic Rna Science V. 298 1421 2002.
ISSN: ISSN 0036-8075
PubMed: 12376595
DOI: 10.1126/SCIENCE.1076093