Chlorine in PDB 1mws: Structure of Nitrocefin Acyl-Penicillin Binding Protein 2A From Methicillin Resistant Staphylococcus Aureus Strain 27R at 2.00 A Resolution.
Protein crystallography data
The structure of Structure of Nitrocefin Acyl-Penicillin Binding Protein 2A From Methicillin Resistant Staphylococcus Aureus Strain 27R at 2.00 A Resolution., PDB code: 1mws
was solved by
D.C.Lim,
N.C.J.Strynadka,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
24.96 /
2.00
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
80.582,
100.747,
187.244,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
23.4 /
27.4
|
Other elements in 1mws:
The structure of Structure of Nitrocefin Acyl-Penicillin Binding Protein 2A From Methicillin Resistant Staphylococcus Aureus Strain 27R at 2.00 A Resolution. also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Structure of Nitrocefin Acyl-Penicillin Binding Protein 2A From Methicillin Resistant Staphylococcus Aureus Strain 27R at 2.00 A Resolution.
(pdb code 1mws). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Structure of Nitrocefin Acyl-Penicillin Binding Protein 2A From Methicillin Resistant Staphylococcus Aureus Strain 27R at 2.00 A Resolution., PDB code: 1mws:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 1mws
Go back to
Chlorine Binding Sites List in 1mws
Chlorine binding site 1 out
of 4 in the Structure of Nitrocefin Acyl-Penicillin Binding Protein 2A From Methicillin Resistant Staphylococcus Aureus Strain 27R at 2.00 A Resolution.
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Structure of Nitrocefin Acyl-Penicillin Binding Protein 2A From Methicillin Resistant Staphylococcus Aureus Strain 27R at 2.00 A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1010
b:27.8
occ:1.00
|
CD
|
A:CD1001
|
2.4
|
26.7
|
1.0
|
OG1
|
A:THR300
|
3.2
|
21.8
|
1.0
|
O
|
A:HOH1016
|
3.3
|
23.9
|
1.0
|
OE2
|
B:GLU145
|
3.5
|
26.2
|
1.0
|
CG
|
A:GLU145
|
3.7
|
25.8
|
1.0
|
OE1
|
A:GLU145
|
3.7
|
23.9
|
1.0
|
ND1
|
A:HIS143
|
3.8
|
25.1
|
1.0
|
CG2
|
A:VAL302
|
3.8
|
28.4
|
1.0
|
CD1
|
A:ILE309
|
4.0
|
28.8
|
1.0
|
CG1
|
A:ILE309
|
4.0
|
28.5
|
1.0
|
CB
|
A:HIS143
|
4.0
|
23.6
|
1.0
|
CD
|
A:GLU145
|
4.1
|
23.0
|
1.0
|
CB
|
A:THR300
|
4.3
|
24.3
|
1.0
|
CG
|
A:HIS143
|
4.3
|
25.0
|
1.0
|
CG2
|
A:THR300
|
4.4
|
21.4
|
1.0
|
CD
|
B:GLU145
|
4.4
|
26.5
|
1.0
|
OE1
|
B:GLU145
|
4.5
|
24.0
|
1.0
|
CE1
|
A:HIS143
|
4.9
|
26.2
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 1mws
Go back to
Chlorine Binding Sites List in 1mws
Chlorine binding site 2 out
of 4 in the Structure of Nitrocefin Acyl-Penicillin Binding Protein 2A From Methicillin Resistant Staphylococcus Aureus Strain 27R at 2.00 A Resolution.
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Structure of Nitrocefin Acyl-Penicillin Binding Protein 2A From Methicillin Resistant Staphylococcus Aureus Strain 27R at 2.00 A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1011
b:31.1
occ:1.00
|
CD
|
A:CD1005
|
2.5
|
29.0
|
1.0
|
O
|
A:HOH1079
|
2.9
|
32.1
|
1.0
|
CG
|
B:GLN207
|
3.5
|
40.3
|
1.0
|
NE2
|
A:GLN140
|
3.5
|
24.2
|
1.0
|
NE2
|
A:HIS311
|
3.5
|
27.5
|
1.0
|
O
|
A:HOH1024
|
3.6
|
23.6
|
1.0
|
NE2
|
A:GLN137
|
3.6
|
33.0
|
1.0
|
CD
|
A:GLN137
|
3.6
|
35.5
|
1.0
|
O
|
A:HOH1159
|
3.7
|
40.5
|
1.0
|
O
|
A:GLY135
|
3.7
|
26.9
|
1.0
|
CB
|
A:ALA310
|
3.8
|
26.5
|
1.0
|
CG
|
A:GLN137
|
3.8
|
33.7
|
1.0
|
OD1
|
B:ASP209
|
3.9
|
36.9
|
1.0
|
CD2
|
A:HIS311
|
3.9
|
27.3
|
1.0
|
CB
|
B:GLN207
|
4.1
|
39.3
|
1.0
|
OE1
|
A:GLN137
|
4.1
|
33.2
|
1.0
|
CD
|
A:GLN140
|
4.5
|
25.0
|
1.0
|
CE1
|
A:HIS311
|
4.5
|
28.7
|
1.0
|
CD
|
B:GLN207
|
4.6
|
41.6
|
1.0
|
OE1
|
A:GLN140
|
4.6
|
26.3
|
1.0
|
CG
|
B:ASP209
|
4.8
|
34.6
|
1.0
|
OG1
|
B:THR210
|
4.9
|
32.1
|
1.0
|
CA
|
A:ALA310
|
4.9
|
29.0
|
1.0
|
OD2
|
B:ASP209
|
4.9
|
31.8
|
1.0
|
C
|
A:GLY135
|
5.0
|
24.0
|
1.0
|
CB
|
A:GLN137
|
5.0
|
32.4
|
1.0
|
OE1
|
B:GLN207
|
5.0
|
41.0
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 1mws
Go back to
Chlorine Binding Sites List in 1mws
Chlorine binding site 3 out
of 4 in the Structure of Nitrocefin Acyl-Penicillin Binding Protein 2A From Methicillin Resistant Staphylococcus Aureus Strain 27R at 2.00 A Resolution.
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Structure of Nitrocefin Acyl-Penicillin Binding Protein 2A From Methicillin Resistant Staphylococcus Aureus Strain 27R at 2.00 A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1009
b:24.8
occ:1.00
|
CD
|
B:CD1002
|
2.5
|
26.5
|
1.0
|
OG1
|
B:THR300
|
3.2
|
22.7
|
1.0
|
NH1
|
B:ARG298
|
3.6
|
44.4
|
1.0
|
OE2
|
A:GLU145
|
3.7
|
24.3
|
1.0
|
O
|
B:HOH1056
|
3.7
|
28.3
|
1.0
|
CG
|
B:GLU145
|
3.7
|
22.8
|
1.0
|
OE1
|
B:GLU145
|
3.7
|
24.0
|
1.0
|
ND1
|
B:HIS143
|
3.7
|
22.9
|
1.0
|
CG2
|
B:VAL302
|
3.8
|
28.8
|
1.0
|
CD1
|
B:ILE309
|
3.8
|
33.0
|
1.0
|
CB
|
B:HIS143
|
3.9
|
21.2
|
1.0
|
CG1
|
B:ILE309
|
4.0
|
30.7
|
1.0
|
CD
|
B:GLU145
|
4.1
|
26.5
|
1.0
|
CB
|
B:THR300
|
4.1
|
23.6
|
1.0
|
CG2
|
B:THR300
|
4.2
|
22.7
|
1.0
|
CG
|
B:HIS143
|
4.2
|
24.8
|
1.0
|
CD
|
A:GLU145
|
4.7
|
23.0
|
1.0
|
CE1
|
B:HIS143
|
4.8
|
24.7
|
1.0
|
OE1
|
A:GLU145
|
4.8
|
23.9
|
1.0
|
CZ
|
B:ARG298
|
4.9
|
47.3
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 1mws
Go back to
Chlorine Binding Sites List in 1mws
Chlorine binding site 4 out
of 4 in the Structure of Nitrocefin Acyl-Penicillin Binding Protein 2A From Methicillin Resistant Staphylococcus Aureus Strain 27R at 2.00 A Resolution.
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Structure of Nitrocefin Acyl-Penicillin Binding Protein 2A From Methicillin Resistant Staphylococcus Aureus Strain 27R at 2.00 A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1012
b:31.9
occ:1.00
|
CD
|
A:CD1003
|
2.5
|
30.4
|
1.0
|
CD
|
B:GLN137
|
3.4
|
40.9
|
1.0
|
NE2
|
B:GLN137
|
3.5
|
40.7
|
1.0
|
NE2
|
B:HIS311
|
3.5
|
27.9
|
1.0
|
NE2
|
B:GLN140
|
3.6
|
22.6
|
1.0
|
O
|
B:HOH1082
|
3.6
|
33.8
|
1.0
|
CG
|
B:GLN137
|
3.6
|
37.4
|
1.0
|
O
|
B:GLY135
|
3.7
|
27.6
|
1.0
|
CG
|
A:GLN207
|
3.7
|
41.7
|
1.0
|
OD2
|
A:ASP209
|
3.7
|
27.7
|
1.0
|
OE1
|
B:GLN137
|
3.8
|
39.9
|
1.0
|
CB
|
B:ALA310
|
3.8
|
27.5
|
1.0
|
CD2
|
B:HIS311
|
3.9
|
26.8
|
1.0
|
CB
|
A:GLN207
|
4.0
|
41.2
|
1.0
|
OE1
|
B:GLN140
|
4.4
|
29.6
|
1.0
|
CD
|
B:GLN140
|
4.4
|
29.6
|
1.0
|
OD1
|
A:ASP209
|
4.6
|
32.9
|
1.0
|
CG
|
A:ASP209
|
4.6
|
30.3
|
1.0
|
CE1
|
B:HIS311
|
4.6
|
27.0
|
1.0
|
OG1
|
A:THR210
|
4.8
|
34.5
|
1.0
|
CB
|
B:GLN137
|
4.8
|
31.8
|
1.0
|
CD
|
A:GLN207
|
4.8
|
44.6
|
1.0
|
C
|
B:GLY135
|
4.9
|
25.0
|
1.0
|
CA
|
B:ALA310
|
5.0
|
28.6
|
1.0
|
|
Reference:
D.Lim,
N.C.Strynadka.
Structural Basis For the Beta Lactam Resistance of PBP2A From Methicillin-Resistant Staphylococcus Aureus. Nat.Struct.Biol. V. 9 870 2002.
ISSN: ISSN 1072-8368
PubMed: 12389036
Page generated: Sat Jul 20 00:13:08 2024
|