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Chlorine in PDB 1n4r: Protein Geranylgeranyltransferase Type-I Complexed with A Geranylgeranylated Kkksktkcvil Peptide Product

Enzymatic activity of Protein Geranylgeranyltransferase Type-I Complexed with A Geranylgeranylated Kkksktkcvil Peptide Product

All present enzymatic activity of Protein Geranylgeranyltransferase Type-I Complexed with A Geranylgeranylated Kkksktkcvil Peptide Product:
2.5.1.58; 2.5.1.59;

Protein crystallography data

The structure of Protein Geranylgeranyltransferase Type-I Complexed with A Geranylgeranylated Kkksktkcvil Peptide Product, PDB code: 1n4r was solved by J.S.Taylor, T.S.Reid, P.J.Casey, L.S.Beese, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.86 / 2.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 272.068, 268.801, 185.310, 90.00, 131.55, 90.00
R / Rfree (%) 20 / 21.8

Other elements in 1n4r:

The structure of Protein Geranylgeranyltransferase Type-I Complexed with A Geranylgeranylated Kkksktkcvil Peptide Product also contains other interesting chemical elements:

Zinc (Zn) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Protein Geranylgeranyltransferase Type-I Complexed with A Geranylgeranylated Kkksktkcvil Peptide Product (pdb code 1n4r). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the Protein Geranylgeranyltransferase Type-I Complexed with A Geranylgeranylated Kkksktkcvil Peptide Product, PDB code: 1n4r:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Chlorine binding site 1 out of 7 in 1n4r

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Chlorine binding site 1 out of 7 in the Protein Geranylgeranyltransferase Type-I Complexed with A Geranylgeranylated Kkksktkcvil Peptide Product


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Protein Geranylgeranyltransferase Type-I Complexed with A Geranylgeranylated Kkksktkcvil Peptide Product within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl801

b:53.7
occ:1.00
 O C:HOH922 2.5 59.5 1.0
NH2 C:ARG287 3.0 69.2 1.0
NH2 C:ARG291 3.2 55.9 1.0
OH C:TYR292 3.6 58.5 1.0
NE C:ARG253 3.8 69.5 1.0
CZ C:ARG287 3.9 68.8 1.0
NH2 C:ARG253 4.0 70.1 1.0
NE C:ARG287 4.0 67.4 1.0
CZ C:ARG291 4.1 56.9 1.0
NH1 C:ARG291 4.2 57.3 1.0
CZ C:ARG253 4.3 70.5 1.0
CZ C:TYR292 4.7 57.6 1.0
CD C:ARG253 4.7 67.4 1.0
CG2 I:VAL64 4.8 51.6 1.0
CG C:ARG253 4.8 65.1 1.0
CE1 C:TYR292 4.9 58.5 1.0
CD2 C:LEU256 5.0 55.0 1.0

Chlorine binding site 2 out of 7 in 1n4r

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Chlorine binding site 2 out of 7 in the Protein Geranylgeranyltransferase Type-I Complexed with A Geranylgeranylated Kkksktkcvil Peptide Product


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Protein Geranylgeranyltransferase Type-I Complexed with A Geranylgeranylated Kkksktkcvil Peptide Product within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl802

b:45.9
occ:1.00
 N D:GLN287 3.1 37.1 1.0
N D:PHE286 3.2 36.8 1.0
CG D:GLN287 3.5 41.0 1.0
O D:HOH836 3.5 51.1 1.0
C D:LYS284 3.6 39.6 1.0
CB D:GLN287 3.6 36.5 1.0
N D:ILE285 3.7 37.0 1.0
CB D:PHE286 3.7 33.6 1.0
CA D:PHE286 3.8 35.6 1.0
O D:LYS284 3.8 41.0 1.0
C D:PHE286 3.9 36.0 1.0
CA D:GLN287 3.9 38.2 1.0
C D:ILE285 3.9 36.6 1.0
CA D:LYS284 3.9 40.6 1.0
CA D:ILE285 4.1 36.4 1.0
NE2 D:GLN287 4.1 44.0 1.0
CD D:GLN287 4.2 43.3 1.0
CD D:LYS281 4.3 46.2 1.0
CA D:LYS281 4.5 40.2 1.0
O D:LYS281 4.6 39.8 1.0
O D:LEU280 4.7 39.3 1.0
N D:LYS284 4.9 42.1 1.0
O D:ILE285 4.9 36.5 1.0
CG D:PHE286 5.0 33.4 1.0
CB D:LYS284 5.0 40.1 1.0

Chlorine binding site 3 out of 7 in 1n4r

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Chlorine binding site 3 out of 7 in the Protein Geranylgeranyltransferase Type-I Complexed with A Geranylgeranylated Kkksktkcvil Peptide Product


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Protein Geranylgeranyltransferase Type-I Complexed with A Geranylgeranylated Kkksktkcvil Peptide Product within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl803

b:51.7
occ:1.00
 N F:GLN287 3.5 42.0 1.0
N F:PHE286 3.5 41.7 1.0
C F:LYS284 3.7 39.5 1.0
CG F:GLN287 3.9 40.8 1.0
N F:ILE285 3.9 39.5 1.0
CA F:LYS284 3.9 40.0 1.0
CB F:GLN287 3.9 40.6 1.0
O F:LYS284 4.0 39.1 1.0
CB F:PHE286 4.0 41.8 1.0
CD F:LYS281 4.0 46.7 1.0
NE2 F:GLN287 4.1 37.4 1.0
CA F:PHE286 4.1 41.6 1.0
C F:ILE285 4.3 41.5 1.0
C F:PHE286 4.3 41.7 1.0
CA F:GLN287 4.3 41.0 1.0
O F:LYS281 4.4 42.7 1.0
CD F:GLN287 4.4 40.9 1.0
CA F:ILE285 4.4 40.0 1.0
CA F:LYS281 4.5 42.1 1.0
NZ F:LYS281 4.5 48.3 1.0
CE F:LYS281 4.6 48.7 1.0
O F:LEU280 4.8 41.8 1.0
N F:LYS284 4.8 41.4 1.0
CB F:LYS284 4.8 41.0 1.0
C F:LYS281 4.9 41.8 1.0

Chlorine binding site 4 out of 7 in 1n4r

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Chlorine binding site 4 out of 7 in the Protein Geranylgeranyltransferase Type-I Complexed with A Geranylgeranylated Kkksktkcvil Peptide Product


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Protein Geranylgeranyltransferase Type-I Complexed with A Geranylgeranylated Kkksktkcvil Peptide Product within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl804

b:52.3
occ:1.00
 O G:HOH913 2.2 44.1 1.0
O G:HOH932 2.5 71.6 1.0
OH G:TYR292 3.1 49.0 1.0
NH2 G:ARG287 3.6 64.1 1.0
NH2 G:ARG291 3.6 44.3 1.0
NE G:ARG253 3.7 55.0 1.0
NH1 G:ARG291 4.0 46.9 1.0
NE G:ARG287 4.1 60.9 1.0
CZ G:TYR292 4.2 49.7 1.0
CD2 G:LEU256 4.2 44.2 1.0
CD G:ARG253 4.3 52.4 1.0
CZ G:ARG291 4.3 46.8 1.0
CZ G:ARG287 4.3 63.0 1.0
CE1 G:TYR292 4.3 50.0 1.0
CZ G:ARG253 4.6 54.5 1.0
CG G:ARG253 4.7 50.8 1.0
NH2 G:ARG253 4.7 54.0 1.0

Chlorine binding site 5 out of 7 in 1n4r

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Chlorine binding site 5 out of 7 in the Protein Geranylgeranyltransferase Type-I Complexed with A Geranylgeranylated Kkksktkcvil Peptide Product


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Protein Geranylgeranyltransferase Type-I Complexed with A Geranylgeranylated Kkksktkcvil Peptide Product within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl805

b:60.3
occ:1.00
 N H:PHE286 3.1 53.2 1.0
N H:GLN287 3.2 54.1 1.0
C H:LYS284 3.5 52.8 1.0
N H:ILE285 3.6 51.5 1.0
CB H:PHE286 3.7 53.8 1.0
CA H:PHE286 3.8 54.1 1.0
CA H:LYS284 3.8 52.7 1.0
O H:LYS284 3.8 53.4 1.0
CB H:GLN287 3.8 54.1 1.0
CG H:GLN287 3.9 57.0 1.0
C H:ILE285 3.9 52.7 1.0
C H:PHE286 4.0 54.1 1.0
CA H:ILE285 4.1 52.3 1.0
NE2 H:GLN287 4.1 56.6 1.0
CA H:GLN287 4.1 53.9 1.0
CD H:LYS281 4.2 61.2 1.0
CA H:LYS281 4.3 53.9 1.0
CD H:GLN287 4.4 57.7 1.0
O H:LYS281 4.4 55.1 1.0
O H:LEU280 4.6 53.0 1.0
N H:LYS284 4.7 53.9 1.0
NZ H:LYS281 4.8 66.1 1.0
CE H:LYS281 4.8 64.9 1.0
C H:LYS281 4.9 53.7 1.0
CB H:LYS284 4.9 50.9 1.0
O H:ILE285 4.9 51.4 1.0
CG H:PHE286 4.9 53.4 1.0

Chlorine binding site 6 out of 7 in 1n4r

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Chlorine binding site 6 out of 7 in the Protein Geranylgeranyltransferase Type-I Complexed with A Geranylgeranylated Kkksktkcvil Peptide Product


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Protein Geranylgeranyltransferase Type-I Complexed with A Geranylgeranylated Kkksktkcvil Peptide Product within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Cl806

b:58.6
occ:1.00
 N J:PHE286 3.1 49.5 1.0
N J:GLN287 3.2 51.7 1.0
NZ J:LYS281 3.4 59.7 1.0
C J:LYS284 3.5 49.1 1.0
N J:ILE285 3.6 47.7 1.0
CB J:PHE286 3.7 51.1 1.0
CA J:PHE286 3.8 51.4 1.0
CA J:LYS284 3.8 49.7 1.0
O J:LYS284 3.8 49.3 1.0
CB J:GLN287 3.8 52.5 1.0
CG J:GLN287 3.9 57.4 1.0
C J:ILE285 3.9 49.0 1.0
C J:PHE286 4.0 51.9 1.0
CD J:LYS281 4.0 53.4 1.0
CE J:LYS281 4.0 57.1 1.0
NE2 J:GLN287 4.0 57.3 1.0
CA J:ILE285 4.1 47.5 1.0
CA J:GLN287 4.1 52.2 1.0
CD J:GLN287 4.3 58.4 1.0
CA J:LYS281 4.3 46.5 1.0
O J:LYS281 4.4 46.9 1.0
O J:LEU280 4.6 46.7 1.0
N J:LYS284 4.7 50.2 1.0
C J:LYS281 4.8 45.8 1.0
CB J:LYS284 4.8 51.4 1.0
O J:ILE285 4.9 50.1 1.0
CG J:PHE286 5.0 49.9 1.0

Chlorine binding site 7 out of 7 in 1n4r

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Chlorine binding site 7 out of 7 in the Protein Geranylgeranyltransferase Type-I Complexed with A Geranylgeranylated Kkksktkcvil Peptide Product


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Protein Geranylgeranyltransferase Type-I Complexed with A Geranylgeranylated Kkksktkcvil Peptide Product within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Cl807

b:44.5
occ:1.00
 O K:HOH986 2.5 49.6 1.0
OH K:TYR292 3.0 51.8 1.0
NH2 K:ARG287 3.3 65.9 1.0
NH2 K:ARG291 3.6 49.5 1.0
NE K:ARG253 3.8 54.3 1.0
NH1 K:ARG291 3.9 46.7 1.0
CZ K:TYR292 4.1 49.5 1.0
NE K:ARG287 4.1 61.8 1.0
CZ K:ARG287 4.2 64.9 1.0
CZ K:ARG291 4.3 49.2 1.0
CE1 K:TYR292 4.3 48.9 1.0
CG2 A:VAL64 4.4 40.9 1.0
CD K:ARG253 4.5 52.0 1.0
CD2 K:LEU256 4.6 40.5 1.0
NH2 K:ARG253 4.6 53.6 1.0
CG K:ARG253 4.7 47.9 1.0
CZ K:ARG253 4.7 55.5 1.0
O A:HOH935 5.0 49.1 1.0

Reference:

J.S.Taylor, T.S.Reid, K.L.Terry, P.J.Casey, L.S.Beese. Structure of Mammalian Protein Geranylgeranyltransferase Type-I Embo J. V. 22 5963 2003.
ISSN: ISSN 0261-4189
PubMed: 14609943
DOI: 10.1093/EMBOJ/CDG571
Page generated: Sat Jul 20 00:18:08 2024

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