Chlorine in PDB 1n7i: The Structure of Phenylethanolamine N-Methyltransferase in Complex with S-Adenosylhomocysteine and the Inhibitor LY134046
Enzymatic activity of The Structure of Phenylethanolamine N-Methyltransferase in Complex with S-Adenosylhomocysteine and the Inhibitor LY134046
All present enzymatic activity of The Structure of Phenylethanolamine N-Methyltransferase in Complex with S-Adenosylhomocysteine and the Inhibitor LY134046:
2.1.1.28;
Protein crystallography data
The structure of The Structure of Phenylethanolamine N-Methyltransferase in Complex with S-Adenosylhomocysteine and the Inhibitor LY134046, PDB code: 1n7i
was solved by
F.M.Mcmillan,
J.Archbold,
M.J.Mcleish,
J.M.Caine,
K.R.Criscione,
G.L.Grunewald,
J.L.Martin,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
34.92 /
2.80
|
Space group
|
P 43 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
94.350,
94.350,
186.550,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
22.7 /
28.1
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the The Structure of Phenylethanolamine N-Methyltransferase in Complex with S-Adenosylhomocysteine and the Inhibitor LY134046
(pdb code 1n7i). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
The Structure of Phenylethanolamine N-Methyltransferase in Complex with S-Adenosylhomocysteine and the Inhibitor LY134046, PDB code: 1n7i:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 1n7i
Go back to
Chlorine Binding Sites List in 1n7i
Chlorine binding site 1 out
of 4 in the The Structure of Phenylethanolamine N-Methyltransferase in Complex with S-Adenosylhomocysteine and the Inhibitor LY134046
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of The Structure of Phenylethanolamine N-Methyltransferase in Complex with S-Adenosylhomocysteine and the Inhibitor LY134046 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl3002
b:31.7
occ:1.00
|
CL1
|
A:LY13002
|
0.0
|
31.7
|
1.0
|
C7
|
A:LY13002
|
1.5
|
36.9
|
1.0
|
C6
|
A:LY13002
|
2.4
|
36.6
|
1.0
|
C8
|
A:LY13002
|
2.6
|
37.8
|
1.0
|
CL2
|
A:LY13002
|
3.1
|
33.4
|
1.0
|
CG1
|
A:VAL53
|
3.2
|
42.0
|
1.0
|
CB
|
A:VAL53
|
3.5
|
42.2
|
1.0
|
NZ
|
A:LYS57
|
3.7
|
32.2
|
1.0
|
C5
|
A:LY13002
|
3.7
|
37.7
|
1.0
|
CG2
|
A:VAL53
|
3.8
|
43.3
|
1.0
|
C8A
|
A:LY13002
|
3.8
|
39.1
|
1.0
|
CD
|
A:ARG44
|
4.0
|
39.3
|
1.0
|
CE
|
A:LYS57
|
4.1
|
32.1
|
1.0
|
O
|
A:ASN39
|
4.1
|
45.6
|
1.0
|
CE
|
A:MET258
|
4.1
|
46.2
|
1.0
|
C4A
|
A:LY13002
|
4.3
|
38.7
|
1.0
|
CB
|
A:ARG44
|
4.5
|
41.1
|
1.0
|
CG
|
A:ARG44
|
4.6
|
40.0
|
1.0
|
NH1
|
A:ARG44
|
4.7
|
38.9
|
1.0
|
CZ
|
A:PHE182
|
4.7
|
54.4
|
1.0
|
NE
|
A:ARG44
|
4.8
|
40.3
|
1.0
|
CD
|
A:LYS57
|
4.8
|
32.0
|
1.0
|
CB
|
A:ASN39
|
4.9
|
42.5
|
1.0
|
CA
|
A:VAL53
|
5.0
|
41.6
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 1n7i
Go back to
Chlorine Binding Sites List in 1n7i
Chlorine binding site 2 out
of 4 in the The Structure of Phenylethanolamine N-Methyltransferase in Complex with S-Adenosylhomocysteine and the Inhibitor LY134046
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of The Structure of Phenylethanolamine N-Methyltransferase in Complex with S-Adenosylhomocysteine and the Inhibitor LY134046 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl3002
b:33.4
occ:1.00
|
CL2
|
A:LY13002
|
0.0
|
33.4
|
1.0
|
C8
|
A:LY13002
|
1.5
|
37.8
|
1.0
|
C8A
|
A:LY13002
|
2.5
|
39.1
|
1.0
|
C7
|
A:LY13002
|
2.6
|
36.9
|
1.0
|
CE
|
A:MET258
|
2.8
|
46.2
|
1.0
|
C1
|
A:LY13002
|
2.9
|
40.3
|
1.0
|
CL1
|
A:LY13002
|
3.1
|
31.7
|
1.0
|
NH1
|
A:ARG44
|
3.2
|
38.9
|
1.0
|
CZ
|
A:ARG44
|
3.6
|
39.5
|
1.0
|
C4A
|
A:LY13002
|
3.8
|
38.7
|
1.0
|
C6
|
A:LY13002
|
3.9
|
36.6
|
1.0
|
N1
|
A:LY13002
|
3.9
|
40.4
|
1.0
|
SD
|
A:MET258
|
4.1
|
48.9
|
1.0
|
NE
|
A:ARG44
|
4.1
|
40.3
|
1.0
|
NH2
|
A:ARG44
|
4.2
|
39.4
|
1.0
|
CG2
|
A:VAL272
|
4.3
|
37.7
|
1.0
|
CD
|
A:ARG44
|
4.3
|
39.3
|
1.0
|
CG2
|
A:VAL269
|
4.3
|
47.5
|
1.0
|
C5
|
A:LY13002
|
4.3
|
37.7
|
1.0
|
CG1
|
A:VAL53
|
4.5
|
42.0
|
1.0
|
CG1
|
A:VAL269
|
4.5
|
45.7
|
1.0
|
CB
|
A:VAL269
|
4.6
|
46.4
|
1.0
|
OD2
|
A:ASP267
|
4.7
|
48.1
|
1.0
|
CG
|
A:MET258
|
4.8
|
43.3
|
1.0
|
CE2
|
A:PHE182
|
4.8
|
53.9
|
1.0
|
OD1
|
A:ASN39
|
4.9
|
42.5
|
1.0
|
CG2
|
A:VAL53
|
4.9
|
43.3
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 1n7i
Go back to
Chlorine Binding Sites List in 1n7i
Chlorine binding site 3 out
of 4 in the The Structure of Phenylethanolamine N-Methyltransferase in Complex with S-Adenosylhomocysteine and the Inhibitor LY134046
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of The Structure of Phenylethanolamine N-Methyltransferase in Complex with S-Adenosylhomocysteine and the Inhibitor LY134046 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl3003
b:19.5
occ:1.00
|
CL1
|
B:LY13003
|
0.0
|
19.5
|
1.0
|
C7
|
B:LY13003
|
1.5
|
24.3
|
1.0
|
C6
|
B:LY13003
|
2.4
|
26.2
|
1.0
|
C8
|
B:LY13003
|
2.6
|
24.2
|
1.0
|
CL2
|
B:LY13003
|
3.0
|
19.8
|
1.0
|
CG1
|
B:VAL553
|
3.2
|
38.7
|
1.0
|
CB
|
B:VAL553
|
3.5
|
38.7
|
1.0
|
CG2
|
B:VAL553
|
3.7
|
38.1
|
1.0
|
C5
|
B:LY13003
|
3.7
|
27.9
|
1.0
|
C8A
|
B:LY13003
|
3.8
|
29.4
|
1.0
|
CD
|
B:ARG544
|
3.9
|
49.2
|
1.0
|
NZ
|
B:LYS557
|
4.0
|
33.4
|
1.0
|
C4A
|
B:LY13003
|
4.3
|
29.7
|
1.0
|
CE
|
B:LYS557
|
4.3
|
33.7
|
1.0
|
O
|
B:ASN539
|
4.4
|
50.1
|
1.0
|
NH1
|
B:ARG544
|
4.4
|
45.2
|
1.0
|
CE
|
B:MET758
|
4.4
|
54.2
|
1.0
|
CG
|
B:ARG544
|
4.5
|
51.2
|
1.0
|
CB
|
B:ARG544
|
4.6
|
51.6
|
1.0
|
NE
|
B:ARG544
|
4.6
|
47.3
|
1.0
|
CD
|
B:LYS557
|
4.8
|
34.3
|
1.0
|
CZ
|
B:ARG544
|
4.8
|
45.6
|
1.0
|
CZ
|
B:PHE682
|
4.8
|
33.1
|
1.0
|
OD1
|
B:ASN539
|
4.9
|
51.7
|
1.0
|
CA
|
B:VAL553
|
4.9
|
39.3
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 1n7i
Go back to
Chlorine Binding Sites List in 1n7i
Chlorine binding site 4 out
of 4 in the The Structure of Phenylethanolamine N-Methyltransferase in Complex with S-Adenosylhomocysteine and the Inhibitor LY134046
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of The Structure of Phenylethanolamine N-Methyltransferase in Complex with S-Adenosylhomocysteine and the Inhibitor LY134046 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl3003
b:19.8
occ:1.00
|
CL2
|
B:LY13003
|
0.0
|
19.8
|
1.0
|
C8
|
B:LY13003
|
1.5
|
24.2
|
1.0
|
C8A
|
B:LY13003
|
2.5
|
29.4
|
1.0
|
C7
|
B:LY13003
|
2.6
|
24.3
|
1.0
|
C1
|
B:LY13003
|
2.9
|
33.4
|
1.0
|
CL1
|
B:LY13003
|
3.0
|
19.5
|
1.0
|
CE
|
B:MET758
|
3.1
|
54.2
|
1.0
|
NH1
|
B:ARG544
|
3.3
|
45.2
|
1.0
|
CZ
|
B:ARG544
|
3.7
|
45.6
|
1.0
|
C4A
|
B:LY13003
|
3.8
|
29.7
|
1.0
|
C6
|
B:LY13003
|
3.8
|
26.2
|
1.0
|
N1
|
B:LY13003
|
3.9
|
33.7
|
1.0
|
CG2
|
B:VAL772
|
4.1
|
32.0
|
1.0
|
OD1
|
B:ASP767
|
4.2
|
44.1
|
1.0
|
SD
|
B:MET758
|
4.2
|
54.9
|
1.0
|
NH2
|
B:ARG544
|
4.2
|
46.0
|
1.0
|
CG2
|
B:VAL769
|
4.2
|
50.0
|
1.0
|
NE
|
B:ARG544
|
4.3
|
47.3
|
1.0
|
CG1
|
B:VAL769
|
4.3
|
48.1
|
1.0
|
C5
|
B:LY13003
|
4.3
|
27.9
|
1.0
|
CB
|
B:VAL769
|
4.5
|
47.8
|
1.0
|
CG1
|
B:VAL553
|
4.5
|
38.7
|
1.0
|
CD
|
B:ARG544
|
4.6
|
49.2
|
1.0
|
OD1
|
B:ASN539
|
4.6
|
51.7
|
1.0
|
CG2
|
B:VAL553
|
5.0
|
38.1
|
1.0
|
|
Reference:
F.M.Mcmillan,
J.Archbold,
M.J.Mcleish,
J.M.Caine,
K.R.Criscione,
G.L.Grunewald,
J.L.Martin.
Molecular Recognition of Sub-Micromolar Inhibitors By the Epinephrine-Synthesizing Enzyme Phenylethanolamine N-Methyltransferase. J.Med.Chem. V. 47 37 2004.
ISSN: ISSN 0022-2623
PubMed: 14695818
DOI: 10.1021/JM0205752
Page generated: Sat Jul 20 00:20:50 2024
|