Chlorine in PDB 1n7z: Structure and Location of Gene Product 8 in the Bacteriophage T4 Baseplate

The structure of Structure and Location of Gene Product 8 in the Bacteriophage T4 Baseplate, PDB code: 1n7z was solved by P.G.Leiman, M.M.Shneider, V.A.Kostyuchenko, P.R.Chipman, V.V.Mesyanzhinov, M.G.Rossmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.08 / 2.00
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	66.388, 78.472, 88.227, 110.96, 97.60, 111.39
R / Rfree (%)	21.3 / 24

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30;

Binding sites:

The binding sites of Chlorine atom in the Structure and Location of Gene Product 8 in the Bacteriophage T4 Baseplate (pdb code 1n7z). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 30 binding sites of Chlorine where determined in the Structure and Location of Gene Product 8 in the Bacteriophage T4 Baseplate, PDB code: 1n7z:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 30 in the Structure and Location of Gene Product 8 in the Bacteriophage T4 Baseplate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure and Location of Gene Product 8 in the Bacteriophage T4 Baseplate within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1701 b:27.8 occ:1.00 O A:HOH1862 2.8 54.9 1.0 OG1 A:THR105 3.1 30.3 1.0 N A:TYR104 3.2 29.0 1.0 N A:THR105 3.4 28.9 1.0 CD A:PRO103 3.6 29.4 1.0 N A:PRO103 3.7 29.6 1.0 CA A:ASP102 3.7 32.6 1.0 CA A:TYR104 3.7 28.5 1.0 C A:ASP102 3.8 30.6 1.0 C A:TYR104 3.8 29.9 1.0 CB A:TYR104 3.8 28.0 1.0 CB A:THR105 3.8 30.4 1.0 CG A:PRO103 4.0 28.6 1.0 CD2 A:TYR104 4.2 28.7 1.0 CA A:THR105 4.3 29.6 1.0 C A:PRO103 4.3 27.6 1.0 CG A:TYR104 4.4 27.7 1.0 O A:ASP102 4.5 27.0 1.0 CA A:PRO103 4.5 28.4 1.0 CB A:ASP102 4.6 36.1 1.0 OD2 A:ASP102 4.6 41.9 1.0 N A:ASP102 4.7 32.8 1.0 O A:TYR104 4.7 30.4 1.0 CB A:ARG165 4.9 33.6 1.0 CB A:PRO103 5.0 28.9 1.0

Chlorine binding site 2 out of 30 in the Structure and Location of Gene Product 8 in the Bacteriophage T4 Baseplate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure and Location of Gene Product 8 in the Bacteriophage T4 Baseplate within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1702 b:26.2 occ:1.00 O A:HOH1829 3.0 39.9 1.0 O B:HOH1781 3.1 32.0 1.0 ND2 B:ASN35 3.2 21.9 1.0 O A:HOH1823 3.2 32.0 1.0 ND2 A:ASN26 3.3 22.4 1.0 ND2 A:ASN23 3.3 19.5 1.0 CG A:LEU22 3.7 14.8 1.0 O A:LEU22 3.8 14.7 1.0 C A:LEU22 4.0 14.3 1.0 CA A:ASN23 4.0 16.2 1.0 CD2 A:LEU22 4.0 16.4 1.0 N A:ASN23 4.0 16.2 1.0 CB A:ASN26 4.2 21.7 1.0 CG B:ASN35 4.2 25.5 1.0 CG A:ASN26 4.2 21.0 1.0 CB A:LEU22 4.3 14.2 1.0 OD1 B:ASN35 4.4 24.7 1.0 OE1 A:GLU19 4.4 19.7 1.0 CG A:ASN23 4.5 16.9 1.0 O A:HOH1735 4.7 21.5 1.0 CA A:LEU22 4.8 15.0 1.0 CB A:ASN23 4.9 18.2 1.0 CD1 A:LEU22 4.9 11.6 1.0 O B:HOH1888 5.0 41.0 1.0 O B:HOH1758 5.0 25.3 1.0

Chlorine binding site 3 out of 30 in the Structure and Location of Gene Product 8 in the Bacteriophage T4 Baseplate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure and Location of Gene Product 8 in the Bacteriophage T4 Baseplate within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1703 b:33.2 occ:1.00 O A:HOH1730 3.1 11.3 1.0 N A:GLU214 3.2 22.9 1.0 CB A:GLU214 3.6 29.4 1.0 CG A:GLU214 3.6 34.8 1.0 CB A:TRP212 3.7 17.3 1.0 N A:PRO213 3.7 19.4 1.0 CD A:PRO213 3.7 17.7 1.0 CL A:CL1708 3.9 57.6 1.0 CE2 A:TYR25 3.9 21.8 1.0 CA A:GLU214 4.0 26.0 1.0 CB A:PRO213 4.0 20.9 1.0 C A:PRO213 4.1 21.9 1.0 CA A:PRO213 4.1 20.7 1.0 C A:TRP212 4.1 18.0 1.0 OD1 A:ASN26 4.3 21.6 1.0 CG A:PRO213 4.3 18.9 1.0 CD2 A:TYR25 4.4 19.7 1.0 CA A:TRP212 4.5 17.5 1.0 CD1 A:LEU22 4.5 11.6 1.0 CG A:TRP212 4.6 19.7 1.0 ND2 A:ASN26 4.7 22.4 1.0 O A:TRP212 4.8 18.6 1.0 N A:GLU215 4.9 24.2 1.0 CD A:GLU214 4.9 36.0 1.0 CG A:ASN26 4.9 21.0 1.0 C A:GLU214 5.0 25.6 1.0

Chlorine binding site 4 out of 30 in the Structure and Location of Gene Product 8 in the Bacteriophage T4 Baseplate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure and Location of Gene Product 8 in the Bacteriophage T4 Baseplate within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1704 b:41.6 occ:1.00 NH2 A:ARG202 2.9 27.4 1.0 O A:HOH1790 3.1 32.3 1.0 CD A:ARG202 3.5 26.5 1.0 CB A:ASN201 3.8 21.5 1.0 CE A:LYS250 3.9 26.9 1.0 CZ A:ARG202 4.0 26.9 1.0 NE A:ARG202 4.2 27.6 1.0 NZ A:LYS250 4.2 24.6 1.0 O A:ASN201 4.3 19.2 1.0 OH A:TYR252 4.6 47.4 1.0 CG A:ASN201 4.6 24.0 1.0 O A:HOH1751 4.7 32.6 1.0 C A:ASN201 4.7 21.6 1.0 CG A:ARG202 4.7 24.9 1.0 ND2 A:ASN201 4.7 24.5 1.0 CA A:ASN201 4.8 20.7 1.0

Chlorine binding site 5 out of 30 in the Structure and Location of Gene Product 8 in the Bacteriophage T4 Baseplate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Structure and Location of Gene Product 8 in the Bacteriophage T4 Baseplate within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1705 b:43.3 occ:1.00 N A:SER84 3.4 23.9 1.0 CB A:SER84 3.6 25.5 1.0 CD A:PRO83 3.6 23.1 1.0 OG A:SER84 3.7 25.8 1.0 N A:PRO83 3.9 22.2 1.0 CB A:PRO83 4.0 23.6 1.0 CB A:LEU82 4.0 25.7 1.0 CA A:SER84 4.1 25.8 1.0 C A:PRO83 4.2 22.3 1.0 CG A:PRO83 4.2 22.8 1.0 CA A:PRO83 4.3 22.6 1.0 C A:LEU82 4.5 22.6 1.0 CD1 A:LEU82 4.7 28.8 1.0 CA A:LEU82 4.8 23.8 1.0 CG A:LEU82 4.9 28.5 1.0

Chlorine binding site 6 out of 30 in the Structure and Location of Gene Product 8 in the Bacteriophage T4 Baseplate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Structure and Location of Gene Product 8 in the Bacteriophage T4 Baseplate within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1706 b:34.6 occ:1.00 N A:LYS282 3.1 36.1 1.0 CA A:ALA281 3.5 33.7 1.0 CE A:MSE303 3.6 47.1 1.0 CB A:ALA281 3.7 33.3 1.0 C A:ALA281 3.8 35.1 1.0 SE A:MSE303 3.8 51.3 1.0 O A:LYS282 3.8 39.4 1.0 CA A:MSE303 4.1 36.7 1.0 CA A:LYS282 4.1 37.3 1.0 CB A:LYS282 4.3 36.8 1.0 O A:HOH1902 4.3 43.3 1.0 CB A:MSE303 4.4 38.8 1.0 C A:LYS282 4.4 39.2 1.0 O A:HOH1788 4.6 46.6 1.0 O A:LEU302 4.6 37.6 1.0 CG A:LYS282 4.7 35.9 1.0 CG A:MSE303 4.8 39.7 1.0 N A:MSE303 4.8 34.9 1.0 N A:ALA281 4.8 33.0 1.0 O A:ALA281 5.0 33.7 1.0

Chlorine binding site 7 out of 30 in the Structure and Location of Gene Product 8 in the Bacteriophage T4 Baseplate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Structure and Location of Gene Product 8 in the Bacteriophage T4 Baseplate within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1707 b:46.4 occ:1.00 NE A:ARG248 3.1 19.2 1.0 O A:HOH1754 3.3 25.0 1.0 NH2 A:ARG248 3.9 20.4 1.0 CD1 A:LEU331 3.9 21.2 1.0 CZ A:ARG248 4.0 20.7 1.0 CD A:ARG248 4.0 20.6 1.0 CG A:LEU331 4.1 22.1 1.0 CD2 A:LEU331 4.3 19.1 1.0 CG A:ARG248 4.6 21.4 1.0 CE1 A:TYR207 4.8 31.6 1.0 CB A:ASN329 4.8 26.6 1.0 CG2 A:THR204 4.9 20.4 1.0 CD1 A:TYR207 4.9 29.1 1.0

Chlorine binding site 8 out of 30 in the Structure and Location of Gene Product 8 in the Bacteriophage T4 Baseplate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Structure and Location of Gene Product 8 in the Bacteriophage T4 Baseplate within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1708 b:57.6 occ:1.00 O A:HOH1932 2.9 51.0 1.0 OH A:TYR25 3.2 20.7 1.0 N A:GLU215 3.7 24.2 1.0 CB A:TRP212 3.7 17.3 1.0 CB A:GLU215 3.8 24.9 1.0 CL A:CL1703 3.9 33.2 1.0 CE2 A:TYR25 4.0 21.8 1.0 CZ A:TYR25 4.1 23.4 1.0 CG A:GLU215 4.1 25.1 1.0 CB A:GLU214 4.2 29.4 1.0 CA A:GLU215 4.2 23.9 1.0 CG A:TRP212 4.3 19.7 1.0 CD1 A:TRP212 4.3 21.8 1.0 C A:GLU214 4.5 25.6 1.0 CD A:GLU215 4.6 25.9 1.0 CA A:GLU214 4.6 26.0 1.0 N A:GLU214 4.7 22.9 1.0 O A:HOH1758 4.9 28.7 1.0 OE1 A:GLU215 4.9 23.6 1.0 CA A:TRP212 4.9 17.5 1.0 O A:TRP212 5.0 18.6 1.0

Chlorine binding site 9 out of 30 in the Structure and Location of Gene Product 8 in the Bacteriophage T4 Baseplate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Structure and Location of Gene Product 8 in the Bacteriophage T4 Baseplate within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1729 b:37.2 occ:1.00 O A:HOH1827 2.9 34.9 1.0 O A:HOH1838 3.0 35.6 1.0 NH1 A:ARG92 3.2 21.5 1.0 NH2 A:ARG92 3.4 25.3 1.0 CZ A:ARG92 3.8 24.3 1.0 CZ2 A:TRP128 4.3 22.3 1.0 CH2 A:TRP128 4.5 20.0 1.0

Chlorine binding site 10 out of 30 in the Structure and Location of Gene Product 8 in the Bacteriophage T4 Baseplate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Structure and Location of Gene Product 8 in the Bacteriophage T4 Baseplate within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1709 b:33.8 occ:1.00 N B:TYR104 3.2 28.2 1.0 OG1 B:THR105 3.3 26.6 1.0 CD B:PRO103 3.5 32.2 1.0 N B:THR105 3.5 28.9 1.0 O B:HOH1935 3.6 48.0 1.0 N B:PRO103 3.6 30.7 1.0 CA B:TYR104 3.7 29.0 1.0 CB B:TYR104 3.7 27.9 1.0 CA B:ASP102 3.8 34.1 1.0 C B:ASP102 3.8 31.4 1.0 CG B:PRO103 3.8 31.7 1.0 C B:TYR104 3.8 28.7 1.0 CD2 B:TYR104 3.8 27.5 1.0 CB B:THR105 3.9 28.8 1.0 CG B:TYR104 4.2 25.7 1.0 C B:PRO103 4.2 29.3 1.0 CA B:THR105 4.3 28.5 1.0 CA B:PRO103 4.4 29.8 1.0 O B:ASP102 4.5 30.9 1.0 N B:ASP102 4.6 34.9 1.0 O B:TYR104 4.7 29.9 1.0 CB B:ASP102 4.8 36.7 1.0 CB B:PRO103 4.8 30.5 1.0 CB B:ARG165 4.9 37.0 1.0 CE2 B:TYR104 4.9 25.8 1.0

P.G.Leiman, M.M.Shneider, V.A.Kostyuchenko, P.R.Chipman, V.V.Mesyanzhinov, M.G.Rossmann. Structure and Location of Gene Product 8 in the Bacteriophage T4 Baseplate J.Mol.Biol. V. 328 821 2003.
ISSN: ISSN 0022-2836
PubMed: 12729757
DOI: 10.1016/S0022-2836(03)00366-8