Chlorine in PDB 1n80: Bacteriophage T4 Baseplate Structural Protein GP8

The structure of Bacteriophage T4 Baseplate Structural Protein GP8, PDB code: 1n80 was solved by P.G.Leiman, M.M.Shneider, V.A.Kostyuchenko, P.R.Chipman, V.V.Mesyanzhinov, M.G.Rossmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.11 / 2.45
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	66.869, 66.777, 82.158, 93.11, 101.28, 90.77
R / Rfree (%)	23.6 / 28.4

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 32;

Binding sites:

The binding sites of Chlorine atom in the Bacteriophage T4 Baseplate Structural Protein GP8 (pdb code 1n80). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 32 binding sites of Chlorine where determined in the Bacteriophage T4 Baseplate Structural Protein GP8, PDB code: 1n80:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 32 in the Bacteriophage T4 Baseplate Structural Protein GP8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Bacteriophage T4 Baseplate Structural Protein GP8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl335 b:57.7 occ:1.00 N A:TYR104 3.0 46.6 1.0 OG1 A:THR105 3.2 40.2 1.0 O A:HOH447 3.2 39.6 1.0 N A:THR105 3.2 45.8 1.0 CA A:TYR104 3.4 47.8 1.0 C A:TYR104 3.5 46.7 1.0 CA A:ASP102 3.5 48.9 1.0 N A:PRO103 3.5 45.2 1.0 CB A:TYR104 3.5 49.6 1.0 CD A:PRO103 3.6 44.7 1.0 C A:ASP102 3.6 46.4 1.0 CB A:THR105 3.7 44.0 1.0 CA A:THR105 4.1 44.3 1.0 C A:PRO103 4.1 44.8 1.0 CG A:PRO103 4.1 45.0 1.0 CD2 A:TYR104 4.3 50.6 1.0 O A:TYR104 4.3 46.0 1.0 CG A:TYR104 4.3 49.7 1.0 O A:ASP102 4.3 45.3 1.0 N A:ASP102 4.3 49.5 1.0 CA A:PRO103 4.4 44.5 1.0 CB A:ASP102 4.5 48.8 1.0 OD2 A:ASP102 4.6 51.0 1.0 CG A:ASP102 5.0 51.6 1.0 CB A:PRO103 5.0 44.0 1.0

Chlorine binding site 2 out of 32 in the Bacteriophage T4 Baseplate Structural Protein GP8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Bacteriophage T4 Baseplate Structural Protein GP8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl336 b:51.9 occ:1.00 ND2 A:ASN26 2.9 27.8 1.0 OD1 A:ASN23 3.1 35.0 1.0 CG A:LEU22 3.2 28.2 1.0 N A:ASN23 3.5 27.7 1.0 C A:LEU22 3.5 27.4 1.0 CD2 A:LEU22 3.5 25.3 1.0 O A:LEU22 3.6 27.8 1.0 CA A:ASN23 3.6 27.3 1.0 ND2 B:ASN35 3.6 54.9 1.0 CB A:LEU22 3.7 27.0 1.0 CG A:ASN26 3.8 28.2 1.0 CB A:ASN26 3.8 24.5 1.0 OD1 B:ASN35 4.0 55.2 1.0 CG A:ASN23 4.1 32.6 1.0 CA A:LEU22 4.3 27.5 1.0 CG B:ASN35 4.3 55.8 1.0 CD1 A:LEU22 4.4 26.5 1.0 CB A:ASN23 4.5 29.5 1.0 O A:HOH415 4.5 42.5 1.0 C A:ASN23 4.8 26.3 1.0 O A:GLU19 4.8 23.1 1.0 O B:ASP33 4.8 74.6 1.0 OD1 A:ASN26 5.0 28.4 1.0

Chlorine binding site 3 out of 32 in the Bacteriophage T4 Baseplate Structural Protein GP8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Bacteriophage T4 Baseplate Structural Protein GP8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl337 b:71.5 occ:1.00 N A:VAL65 3.0 31.4 1.0 CG2 A:VAL65 3.4 32.9 1.0 CB A:SER64 3.4 33.4 1.0 CA A:SER64 3.6 31.7 1.0 CB A:VAL65 3.7 33.8 1.0 C A:SER64 3.8 31.4 1.0 CA A:VAL65 3.9 31.6 1.0 O B:HOH414 4.3 58.8 1.0 OG A:SER64 4.4 33.4 1.0 N A:LEU66 4.8 35.1 1.0 C A:VAL65 4.9 32.0 1.0 O A:SER64 5.0 30.6 1.0

Chlorine binding site 4 out of 32 in the Bacteriophage T4 Baseplate Structural Protein GP8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Bacteriophage T4 Baseplate Structural Protein GP8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl338 b:65.0 occ:1.00 ND2 A:ASN26 3.2 27.8 1.0 CD2 A:LEU22 3.8 25.3 1.0 CD1 A:LEU22 3.9 26.5 1.0 OD1 A:ASN26 4.0 28.4 1.0 CG A:ASN26 4.0 28.2 1.0 CG A:LEU22 4.2 28.2 1.0 CB A:PRO213 4.4 28.5 1.0 O A:HOH374 4.5 39.7 1.0 CG A:PRO213 4.7 30.1 1.0 CD A:PRO213 4.9 31.0 1.0

Chlorine binding site 5 out of 32 in the Bacteriophage T4 Baseplate Structural Protein GP8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Bacteriophage T4 Baseplate Structural Protein GP8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl339 b:69.1 occ:1.00 O A:HOH353 3.7 38.0 1.0 CE1 A:HIS305 3.7 37.8 1.0 CG2 A:VAL68 3.8 27.0 1.0 CB A:VAL68 4.0 27.8 1.0 ND1 A:HIS305 4.1 38.0 1.0 CG1 A:VAL68 4.1 24.6 1.0 CA A:VAL65 4.2 31.6 1.0 CG2 A:VAL65 4.2 32.9 1.0 NZ B:LYS15 4.2 32.2 1.0 O B:HOH361 4.3 62.3 1.0 CB A:VAL65 4.6 33.8 1.0 CG1 A:VAL65 4.6 32.9 1.0 CE B:LYS15 4.8 33.3 1.0 CD B:LYS15 4.8 32.5 1.0 N A:VAL65 4.9 31.4 1.0 NE2 A:HIS305 5.0 38.1 1.0

Chlorine binding site 6 out of 32 in the Bacteriophage T4 Baseplate Structural Protein GP8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Bacteriophage T4 Baseplate Structural Protein GP8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl340 b:61.9 occ:1.00 NH2 A:ARG202 3.2 25.4 1.0 O A:HOH472 3.3 54.3 1.0 CD A:ARG202 3.5 27.4 1.0 CB A:ASN201 3.8 27.8 1.0 CZ A:ARG202 4.2 25.3 1.0 NE A:ARG202 4.3 29.4 1.0 NZ A:LYS250 4.3 26.2 1.0 O A:HOH395 4.5 47.2 1.0 CG A:ASN201 4.6 30.7 1.0 CD A:LYS250 4.6 32.6 1.0 CG A:ARG202 4.6 25.9 1.0 CE A:LYS250 4.7 31.0 1.0 ND2 A:ASN201 4.8 34.7 1.0 C A:ASN201 5.0 26.3 1.0 O A:ASN201 5.0 25.2 1.0

Chlorine binding site 7 out of 32 in the Bacteriophage T4 Baseplate Structural Protein GP8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Bacteriophage T4 Baseplate Structural Protein GP8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl341 b:46.1 occ:1.00 O A:HOH400 3.0 41.2 1.0 N A:SER84 3.1 18.0 1.0 OG A:SER84 3.2 24.7 1.0 CB A:SER84 3.5 19.3 1.0 CD A:PRO83 3.5 18.7 1.0 N A:PRO83 3.7 18.8 1.0 CB A:PRO83 3.8 18.7 1.0 CB A:LEU82 3.9 25.2 1.0 CA A:SER84 3.9 20.0 1.0 C A:PRO83 4.1 20.4 1.0 CA A:PRO83 4.1 19.0 1.0 CG A:PRO83 4.1 17.6 1.0 C A:LEU82 4.3 20.5 1.0 CA A:LEU82 4.7 22.9 1.0 CG A:LEU82 4.8 28.6 1.0 CD1 A:LEU82 4.9 28.6 1.0

Chlorine binding site 8 out of 32 in the Bacteriophage T4 Baseplate Structural Protein GP8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Bacteriophage T4 Baseplate Structural Protein GP8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl342 b:53.2 occ:1.00 N A:LYS282 3.1 35.2 1.0 O A:HOH390 3.4 38.8 1.0 CG A:MET303 3.5 33.0 1.0 CA A:ALA281 3.7 31.4 1.0 CB A:MET303 3.8 31.3 1.0 C A:ALA281 3.9 32.8 1.0 O A:LYS282 3.9 40.9 1.0 CA A:MET303 3.9 29.9 1.0 CA A:LYS282 4.1 38.3 1.0 CB A:ALA281 4.1 30.8 1.0 CB A:LYS282 4.3 36.7 1.0 CE A:MET303 4.4 35.1 1.0 C A:LYS282 4.5 40.4 1.0 SD A:MET303 4.7 39.8 1.0 O A:LEU302 4.8 27.3 1.0 N A:MET303 4.8 30.0 1.0 O A:GLU280 4.8 25.5 1.0 N A:ARG304 4.9 30.7 1.0 N A:ALA281 4.9 29.6 1.0 C A:MET303 5.0 30.1 1.0

Chlorine binding site 9 out of 32 in the Bacteriophage T4 Baseplate Structural Protein GP8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Bacteriophage T4 Baseplate Structural Protein GP8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl343 b:62.1 occ:1.00 O A:HOH468 3.1 65.0 1.0 O A:HOH423 3.3 45.0 1.0 NH1 A:ARG17 3.7 42.1 1.0 CD A:ARG17 3.8 34.9 1.0 CB A:SER14 3.8 43.7 1.0 O A:HOH419 3.9 65.0 1.0 CA A:SER14 4.2 43.9 1.0 ND2 A:ASN245 4.5 26.0 1.0 CZ A:ARG17 4.5 41.7 1.0 NE A:ARG17 4.5 38.3 1.0 CG A:ARG17 4.8 33.9 1.0 O A:SER14 4.8 43.1 1.0 CD A:LYS243 4.9 30.9 1.0

Chlorine binding site 10 out of 32 in the Bacteriophage T4 Baseplate Structural Protein GP8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Bacteriophage T4 Baseplate Structural Protein GP8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl344 b:0.6 occ:1.00 O A:ARG241 3.4 32.4 1.0 NZ A:LYS15 3.6 51.8 1.0 NZ A:LYS243 3.9 35.9 1.0 CE A:LYS15 3.9 50.7 1.0 C A:ARG241 4.1 31.4 1.0 NH1 A:ARG132 4.2 39.3 1.0 O A:TYR240 4.3 31.0 1.0 CA A:ARG241 4.3 31.9 1.0 CE A:LYS243 4.5 35.6 1.0 NH2 A:ARG132 4.6 39.9 1.0 CZ A:ARG132 4.7 39.1 1.0 CG A:LYS243 4.9 30.8 1.0

P.G.Leiman, M.M.Shneider, V.A.Kostyuchenko, P.R.Chipman, V.V.Mesyanzhinov, M.G.Rossmann. Structure and Location of Gene Product 8 in the Bacteriophage T4 Baseplate J.Mol.Biol. V. 328 821 2003.
ISSN: ISSN 0022-2836
PubMed: 12729757
DOI: 10.1016/S0022-2836(03)00366-8