Chlorine in PDB 1ndd: Structure of NEDD8

The structure of Structure of NEDD8, PDB code: 1ndd was solved by F.G.Whitby, G.Xia, C.M.Pickart, C.P.Hill, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	100.00 / 1.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	45.804, 64.972, 48.573, 90.00, 96.66, 90.00
R / Rfree (%)	21.9 / 30

The binding sites of Chlorine atom in the Structure of NEDD8 (pdb code 1ndd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of NEDD8, PDB code: 1ndd:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Structure of NEDD8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of NEDD8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl2002 b:20.3 occ:1.00 O A:HOH1054 2.9 23.1 1.0 O D:HOH1068 3.0 25.7 1.0 N D:LEU371 3.4 13.6 1.0 N A:LEU71 3.5 17.1 1.0 CA A:VAL70 3.8 15.0 1.0 CA D:VAL370 3.9 13.9 1.0 O D:HOH1048 3.9 19.1 1.0 CB D:LEU371 4.0 17.4 1.0 C D:VAL370 4.1 14.4 1.0 CG D:LEU371 4.1 20.8 1.0 C A:VAL70 4.2 15.0 1.0 CG A:LEU71 4.2 20.2 1.0 CB A:VAL70 4.2 18.2 1.0 CB A:LEU71 4.3 16.6 1.0 CB D:VAL370 4.3 15.1 1.0 CA D:LEU371 4.3 15.1 1.0 CD1 D:LEU371 4.4 19.2 1.0 CA A:LEU71 4.5 16.1 1.0 CG1 A:VAL70 4.5 18.4 1.0 CD1 D:LEU308 4.5 33.2 1.0 CD1 A:LEU71 4.6 21.2 1.0 O A:LEU69 4.6 14.3 1.0 O D:LEU369 4.7 13.8 1.0 CG1 D:VAL370 4.8 16.1 1.0 N A:VAL70 5.0 12.8 1.0

Chlorine binding site 2 out of 2 in the Structure of NEDD8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of NEDD8 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl2001 b:15.8 occ:1.00 O B:HOH1036 3.1 18.7 1.0 O C:HOH1039 3.2 11.4 1.0 N C:LEU271 3.3 12.6 1.0 N B:LEU171 3.4 11.2 1.0 CA C:VAL270 3.8 12.2 1.0 CG B:LEU171 3.9 10.9 1.0 CA B:VAL170 3.9 11.5 1.0 CB C:LEU271 4.0 13.2 1.0 O C:HOH1051 4.0 20.5 1.0 C C:VAL270 4.0 12.8 1.0 CB B:LEU171 4.0 12.1 1.0 C B:VAL170 4.1 11.7 1.0 CG C:LEU271 4.2 16.5 1.0 CD1 B:LEU171 4.2 11.8 1.0 CA C:LEU271 4.2 13.1 1.0 CB C:VAL270 4.3 11.1 1.0 CA B:LEU171 4.3 11.1 1.0 CB B:VAL170 4.4 11.7 1.0 CD1 C:LEU271 4.6 17.8 1.0 O C:LEU269 4.7 10.9 1.0 CG1 C:VAL270 4.8 12.1 1.0 O B:LEU169 4.8 10.1 1.0 CG1 B:VAL170 4.8 18.0 1.0

F.G.Whitby, G.Xia, C.M.Pickart, C.P.Hill. Crystal Structure of the Human Ubiquitin-Like Protein NEDD8 and Interactions with Ubiquitin Pathway Enzymes. J.Biol.Chem. V. 273 34983 1998.
ISSN: ISSN 0021-9258
PubMed: 9857030
DOI: 10.1074/JBC.273.52.34983