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Chlorine in PDB 1nnl: Crystal Structure of Human Phosphoserine Phosphatase

Enzymatic activity of Crystal Structure of Human Phosphoserine Phosphatase

All present enzymatic activity of Crystal Structure of Human Phosphoserine Phosphatase:
3.1.3.3;

Protein crystallography data

The structure of Crystal Structure of Human Phosphoserine Phosphatase, PDB code: 1nnl was solved by Y.Peeraer, A.Rabijns, C.Verboven, J.F.Collet, E.Van Schaftingen, C.De Ranter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.86 / 1.53
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 49.033, 130.249, 157.293, 90.00, 90.00, 90.00
R / Rfree (%) 21.7 / 23.4

Other elements in 1nnl:

The structure of Crystal Structure of Human Phosphoserine Phosphatase also contains other interesting chemical elements:

Calcium (Ca) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human Phosphoserine Phosphatase (pdb code 1nnl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of Human Phosphoserine Phosphatase, PDB code: 1nnl:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 1nnl

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Chlorine binding site 1 out of 6 in the Crystal Structure of Human Phosphoserine Phosphatase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Phosphoserine Phosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1500

b:21.9
occ:1.00
 O A:HOH1028 3.0 17.4 1.0
N A:GLY110 3.2 17.1 1.0
NZ A:LYS158 3.2 20.6 1.0
O A:HOH1149 3.3 51.3 1.0
O A:HOH1019 3.3 15.9 1.0
CE A:LYS158 3.6 21.1 1.0
OD2 A:ASP20 3.7 16.4 1.0
CA A:GLY110 4.0 18.9 1.0
CA A:SER109 4.1 15.1 1.0
C A:SER109 4.2 17.0 1.0
OG A:SER109 4.2 18.8 1.0
O A:HOH1026 4.4 16.4 1.0
O A:HOH1168 4.4 38.1 1.0
CB A:SER109 4.8 17.1 1.0
CA A:CA2001 4.8 14.0 1.0
C A:GLY110 4.8 20.2 1.0
N A:GLY111 4.9 19.6 1.0
OG1 A:THR182 4.9 21.5 1.0
CG A:ASP20 4.9 13.7 1.0

Chlorine binding site 2 out of 6 in 1nnl

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Chlorine binding site 2 out of 6 in the Crystal Structure of Human Phosphoserine Phosphatase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Human Phosphoserine Phosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1503

b:21.0
occ:1.00
 O A:HOH1048 3.1 23.6 1.0
OG A:SER114 3.2 23.7 1.0
N A:LEU135 3.2 20.1 1.0
N A:SER114 3.3 21.5 1.0
CB A:SER114 3.5 23.0 1.0
CB A:PHE112 3.8 20.6 1.0
N A:ARG113 3.8 19.8 1.0
CB A:LEU135 3.8 20.6 1.0
CG A:LEU135 3.9 22.3 1.0
CA A:ARG134 3.9 19.9 1.0
CA A:SER114 4.0 22.1 1.0
O A:ASN133 4.0 19.7 1.0
C A:ARG134 4.1 19.5 1.0
CA A:LEU135 4.1 21.2 1.0
CD1 A:LEU135 4.2 23.1 1.0
C A:PHE112 4.2 19.0 1.0
C A:ARG113 4.3 21.0 1.0
CA A:ARG113 4.3 20.0 1.0
CB A:ARG113 4.3 22.5 1.0
CA A:PHE112 4.4 19.0 1.0
O A:LEU135 4.6 21.4 1.0
CG A:PHE112 4.7 20.6 1.0
CB A:ARG134 4.8 22.4 1.0
C A:ASN133 4.8 18.8 1.0
N A:ARG134 4.8 19.8 1.0
C A:LEU135 4.9 21.8 1.0
CD1 A:PHE112 4.9 19.7 1.0
O A:PHE112 4.9 20.0 1.0

Chlorine binding site 3 out of 6 in 1nnl

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Chlorine binding site 3 out of 6 in the Crystal Structure of Human Phosphoserine Phosphatase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Human Phosphoserine Phosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1505

b:21.4
occ:1.00
 O A:HOH1100 3.1 19.3 1.0
O A:HOH1074 3.1 27.3 1.0
N A:PHE112 3.2 18.3 1.0
CA A:GLY30 3.4 34.3 1.0
CA A:GLY111 3.6 19.9 1.0
CD1 A:ILE115 3.7 28.0 1.0
CB A:ILE115 3.9 25.1 1.0
C A:GLY111 3.9 17.5 1.0
C A:GLY30 4.0 35.4 1.0
CG2 A:ILE115 4.0 25.2 1.0
N A:ILE31 4.1 36.2 1.0
O A:PHE112 4.2 20.0 1.0
N A:GLY30 4.2 32.5 1.0
CD2 A:PHE112 4.2 23.4 1.0
CA A:PHE112 4.2 19.0 1.0
CG2 A:VAL116 4.3 21.3 1.0
CG1 A:ILE115 4.3 26.7 1.0
CB A:PHE112 4.5 20.6 1.0
OD1 A:ASP22 4.6 19.5 1.0
C A:PHE112 4.7 19.0 1.0
CG A:PHE112 4.8 20.6 1.0
O A:GLY30 4.8 35.3 1.0
N A:GLY111 4.8 19.6 1.0
OD2 A:ASP22 4.9 22.3 1.0
OG A:SER109 4.9 18.8 1.0

Chlorine binding site 4 out of 6 in 1nnl

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Chlorine binding site 4 out of 6 in the Crystal Structure of Human Phosphoserine Phosphatase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Human Phosphoserine Phosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1502

b:23.9
occ:1.00
 O B:HOH1053 3.1 24.2 1.0
OG B:SER114 3.1 27.3 1.0
N B:SER114 3.2 20.5 1.0
N B:LEU135 3.2 22.7 1.0
CB B:SER114 3.4 22.3 1.0
CB B:PHE112 3.7 23.9 1.0
N B:ARG113 3.7 22.4 1.0
CB B:LEU135 3.8 23.4 1.0
CG B:LEU135 3.9 23.6 1.0
CA B:SER114 3.9 22.5 1.0
CA B:ARG134 4.0 23.6 1.0
C B:ARG134 4.1 23.0 1.0
C B:PHE112 4.1 21.9 1.0
CA B:LEU135 4.1 23.0 1.0
O B:ASN133 4.1 22.9 1.0
C B:ARG113 4.2 20.9 1.0
CD1 B:LEU135 4.2 24.9 1.0
CA B:ARG113 4.3 22.8 1.0
CA B:PHE112 4.3 22.9 1.0
CB B:ARG113 4.3 25.9 1.0
O B:LEU135 4.6 21.6 1.0
CG B:PHE112 4.7 23.9 1.0
O B:PHE112 4.8 22.5 1.0
CB B:ARG134 4.8 25.2 1.0
C B:LEU135 4.9 22.6 1.0
N B:ARG134 4.9 23.0 1.0
C B:ASN133 4.9 22.8 1.0
CD1 B:PHE112 5.0 22.5 1.0

Chlorine binding site 5 out of 6 in 1nnl

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Chlorine binding site 5 out of 6 in the Crystal Structure of Human Phosphoserine Phosphatase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Human Phosphoserine Phosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1506

b:27.4
occ:1.00
 O B:HOH1072 3.1 25.5 1.0
N B:PHE112 3.1 22.4 1.0
O B:HOH1082 3.2 23.8 1.0
CA B:GLY111 3.4 24.7 1.0
CA B:GLY30 3.4 27.4 1.0
C B:GLY111 3.8 23.0 1.0
CD1 B:ILE115 3.8 29.5 1.0
CD2 B:PHE112 3.9 23.9 1.0
CB B:ILE115 3.9 26.6 1.0
C B:GLY30 4.0 26.5 1.0
CG2 B:ILE115 4.1 27.4 1.0
CA B:PHE112 4.2 22.9 1.0
N B:ILE31 4.2 26.4 1.0
N B:GLY30 4.2 27.0 1.0
O B:PHE112 4.3 22.5 1.0
CB B:PHE112 4.4 23.9 1.0
CG2 B:VAL116 4.4 23.6 1.0
CG1 B:ILE115 4.4 27.6 1.0
OD1 B:ASP22 4.4 21.3 1.0
CG B:PHE112 4.5 23.9 1.0
CE2 B:PHE112 4.6 24.7 1.0
C B:PHE112 4.7 21.9 1.0
O B:GLY30 4.7 27.2 1.0
N B:GLY111 4.7 23.7 1.0
OD2 B:ASP22 5.0 24.2 1.0
OG B:SER109 5.0 23.1 1.0
O B:GLY111 5.0 24.9 1.0

Chlorine binding site 6 out of 6 in 1nnl

Go back to Chlorine Binding Sites List in 1nnl
Chlorine binding site 6 out of 6 in the Crystal Structure of Human Phosphoserine Phosphatase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Human Phosphoserine Phosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1507

b:33.5
occ:1.00
 O B:HOH1183 3.0 36.4 1.0
O B:HOH1068 3.1 21.8 1.0
N B:GLY110 3.1 22.8 1.0
O B:HOH1055 3.3 20.0 1.0
NZ B:LYS158 3.4 25.4 1.0
CE B:LYS158 3.6 27.1 1.0
CA B:GLY110 3.8 23.9 1.0
OD2 B:ASP20 3.9 22.0 1.0
C B:SER109 4.1 22.1 1.0
CA B:SER109 4.1 20.6 1.0
OG B:SER109 4.4 23.1 1.0
O B:HOH1021 4.4 22.5 1.0
O B:HOH1411 4.5 47.4 1.0
C B:GLY110 4.7 24.3 1.0
N B:GLY111 4.8 23.7 1.0
CB B:SER109 4.9 21.9 1.0
OD2 B:ASP22 4.9 24.2 1.0
CA B:CA2002 4.9 17.5 1.0

Reference:

Y.Peeraer, A.Rabijns, C.Verboven, J.F.Collet, E.Van Schaftingen, C.De Ranter. High-Resolution Structure of Human Phosphoserine Phosphatase in Open Conformation. Acta Crystallogr.,Sect.D V. 59 971 2003.
ISSN: ISSN 0907-4449
PubMed: 12777757
DOI: 10.1107/S0907444903005407
Page generated: Sat Jul 20 00:34:20 2024

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