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Chlorine in PDB 1nqj: Crystal Structure of Clostridium Histolyticum Colg Collagenase Collagen-Binding Domain 3B at 1.0 Angstrom Resolution in Absence of Calcium

Enzymatic activity of Crystal Structure of Clostridium Histolyticum Colg Collagenase Collagen-Binding Domain 3B at 1.0 Angstrom Resolution in Absence of Calcium

All present enzymatic activity of Crystal Structure of Clostridium Histolyticum Colg Collagenase Collagen-Binding Domain 3B at 1.0 Angstrom Resolution in Absence of Calcium:
3.4.24.3;

Protein crystallography data

The structure of Crystal Structure of Clostridium Histolyticum Colg Collagenase Collagen-Binding Domain 3B at 1.0 Angstrom Resolution in Absence of Calcium, PDB code: 1nqj was solved by J.J.Wilson, O.Matsushita, A.Okabe, J.Sakon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.85 / 1.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 40.637, 57.708, 46.320, 90.00, 95.69, 90.00
R / Rfree (%) 14 / 16.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Clostridium Histolyticum Colg Collagenase Collagen-Binding Domain 3B at 1.0 Angstrom Resolution in Absence of Calcium (pdb code 1nqj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Clostridium Histolyticum Colg Collagenase Collagen-Binding Domain 3B at 1.0 Angstrom Resolution in Absence of Calcium, PDB code: 1nqj:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1nqj

Go back to Chlorine Binding Sites List in 1nqj
Chlorine binding site 1 out of 2 in the Crystal Structure of Clostridium Histolyticum Colg Collagenase Collagen-Binding Domain 3B at 1.0 Angstrom Resolution in Absence of Calcium


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Clostridium Histolyticum Colg Collagenase Collagen-Binding Domain 3B at 1.0 Angstrom Resolution in Absence of Calcium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1009

b:12.0
occ:1.00
H A:LYS937 2.2 9.7 1.0
H A:GLU938 2.6 11.6 1.0
HE3 A:LYS1008 3.0 19.1 1.0
HE1 A:PHE915 3.0 15.1 1.0
HZ3 A:LYS1008 3.1 25.9 1.0
N A:LYS937 3.1 8.1 1.0
HG2 A:GLU938 3.1 18.5 0.4
HA A:VAL936 3.2 10.6 1.0
HB2 A:LYS937 3.3 15.5 1.0
N A:GLU938 3.4 9.7 1.0
HG13 A:VAL936 3.5 14.2 1.0
HD3 A:LYS1008 3.5 14.8 1.0
CE A:LYS1008 3.6 15.9 1.0
NZ A:LYS1008 3.7 17.3 1.0
HB3 A:GLU938 3.7 16.7 0.6
CE1 A:PHE915 3.8 12.5 1.0
CA A:LYS937 3.8 9.4 1.0
HZ1 A:LYS1008 3.8 25.9 1.0
HG2 A:LYS937 3.8 22.3 1.0
O A:HOH2147 3.9 28.9 1.0
CB A:LYS937 3.9 12.9 1.0
O A:GLU938 4.0 9.4 1.0
C A:VAL936 4.0 8.0 1.0
CA A:VAL936 4.0 8.9 1.0
C A:LYS937 4.0 10.5 1.0
CG A:GLU938 4.1 15.4 0.4
CD A:LYS1008 4.1 12.3 1.0
CG1 A:VAL936 4.2 9.4 1.0
HZ A:PHE915 4.2 15.0 1.0
HG11 A:VAL936 4.2 14.2 1.0
HB2 A:GLU938 4.3 16.7 0.6
CB A:GLU938 4.3 13.9 0.6
HG3 A:GLU938 4.3 18.5 0.4
CA A:GLU938 4.3 10.3 1.0
CG A:LYS937 4.4 18.6 1.0
CZ A:PHE915 4.4 12.5 1.0
HD2 A:LYS1008 4.4 14.8 1.0
HZ2 A:LYS1008 4.4 25.9 1.0
HE2 A:LYS1008 4.5 19.1 1.0
CB A:GLU938 4.6 14.0 0.4
O A:GLU935 4.6 11.1 1.0
C A:GLU938 4.6 8.8 1.0
HG22 A:VAL936 4.6 13.2 1.0
HD1 A:PHE915 4.7 14.1 1.0
HG3 A:LYS937 4.7 22.3 1.0
CD1 A:PHE915 4.7 11.7 1.0
CB A:VAL936 4.7 8.2 1.0
HB3 A:GLU938 4.7 16.8 0.4
HA A:LYS937 4.7 11.3 1.0
HB3 A:LYS937 4.8 15.5 1.0

Chlorine binding site 2 out of 2 in 1nqj

Go back to Chlorine Binding Sites List in 1nqj
Chlorine binding site 2 out of 2 in the Crystal Structure of Clostridium Histolyticum Colg Collagenase Collagen-Binding Domain 3B at 1.0 Angstrom Resolution in Absence of Calcium


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Clostridium Histolyticum Colg Collagenase Collagen-Binding Domain 3B at 1.0 Angstrom Resolution in Absence of Calcium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1009

b:6.5
occ:1.00
HZ3 B:LYS1008 2.4 12.3 1.0
H B:LYS937 2.6 4.4 1.0
H B:GLU938 2.6 4.5 1.0
HB2 B:LYS937 2.9 6.7 1.0
NZ B:LYS1008 3.2 8.2 1.0
O B:HOH2196 3.2 19.4 1.0
N B:LYS937 3.3 3.7 1.0
N B:GLU938 3.4 3.7 1.0
HZ1 B:LYS1008 3.4 12.3 1.0
HE1 B:PHE915 3.4 9.8 1.0
HB2 B:GLU938 3.5 5.1 1.0
HD3 B:LYS1008 3.6 8.0 1.0
HE3 B:LYS1008 3.6 10.8 1.0
HG3 B:GLU938 3.7 5.1 1.0
CB B:LYS937 3.7 5.5 1.0
HZ2 B:LYS1008 3.8 12.3 1.0
CE B:LYS1008 3.8 9.0 1.0
HA B:VAL936 3.8 5.2 1.0
CA B:LYS937 3.9 4.6 1.0
HG13 B:VAL936 4.0 7.1 1.0
CE1 B:PHE915 4.0 8.1 1.0
C B:LYS937 4.1 3.6 1.0
CB B:GLU938 4.1 4.2 1.0
HG3 B:LYS937 4.1 9.7 1.0
O B:GLU938 4.1 4.4 1.0
CD B:LYS1008 4.2 6.7 1.0
CA B:GLU938 4.2 3.5 1.0
CG B:GLU938 4.3 4.3 1.0
HD1 B:PHE915 4.4 9.4 1.0
HB3 B:LYS937 4.4 6.7 1.0
C B:VAL936 4.4 4.4 1.0
HD2 B:LYS937 4.4 11.8 1.0
CG B:LYS937 4.4 8.1 1.0
HG11 B:VAL936 4.5 7.1 1.0
CA B:VAL936 4.5 4.4 1.0
CD1 B:PHE915 4.6 7.8 1.0
CG1 B:VAL936 4.7 4.7 1.0
HD2 B:LYS1008 4.7 8.0 1.0
C B:GLU938 4.7 3.6 1.0
O B:HOH2186 4.7 18.6 1.0
HE2 B:LYS1008 4.7 10.8 1.0
HA B:LYS937 4.8 5.5 1.0
CZ B:PHE915 4.9 7.8 1.0
HZ B:PHE915 4.9 9.3 1.0
HB3 B:GLU938 5.0 5.1 1.0

Reference:

J.J.Wilson, O.Matsushita, A.Okabe, J.Sakon. A Bacterial Collagen-Binding Domain with Novel Calcium-Binding Motif Controls Domain Orientation Embo J. V. 22 1743 2003.
ISSN: ISSN 0261-4189
PubMed: 12682007
DOI: 10.1093/EMBOJ/CDG172
Page generated: Sat Dec 12 08:43:52 2020

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