Atomistry » Chlorine » PDB 1nvf-1o3m » 1nzf
Atomistry »
  Chlorine »
    PDB 1nvf-1o3m »
      1nzf »

Chlorine in PDB 1nzf: T4 Phage Bgt-D100A Mutant in Complex with Udp-Glucose: Form II

Enzymatic activity of T4 Phage Bgt-D100A Mutant in Complex with Udp-Glucose: Form II

All present enzymatic activity of T4 Phage Bgt-D100A Mutant in Complex with Udp-Glucose: Form II:
2.4.1.27;

Protein crystallography data

The structure of T4 Phage Bgt-D100A Mutant in Complex with Udp-Glucose: Form II, PDB code: 1nzf was solved by L.Lariviere, S.Morera, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 63.119, 72.958, 80.148, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 22

Chlorine Binding Sites:

The binding sites of Chlorine atom in the T4 Phage Bgt-D100A Mutant in Complex with Udp-Glucose: Form II (pdb code 1nzf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the T4 Phage Bgt-D100A Mutant in Complex with Udp-Glucose: Form II, PDB code: 1nzf:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1nzf

Go back to Chlorine Binding Sites List in 1nzf
Chlorine binding site 1 out of 2 in the T4 Phage Bgt-D100A Mutant in Complex with Udp-Glucose: Form II


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of T4 Phage Bgt-D100A Mutant in Complex with Udp-Glucose: Form II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl352

b:21.2
occ:1.00
OH A:TYR261 2.9 19.3 1.0
O A:HOH610 3.0 42.6 1.0
NH1 A:ARG102 3.2 23.8 1.0
N A:ARG102 3.3 21.1 1.0
CG A:ARG102 3.4 19.1 1.0
CB A:ARG102 3.6 21.1 1.0
CE1 A:TYR261 3.7 21.0 1.0
N A:ILE101 3.7 21.0 1.0
CZ A:TYR261 3.7 20.0 1.0
CD A:ARG102 3.7 21.9 1.0
CZ A:ARG191 3.8 26.9 1.0
NH1 A:ARG191 3.8 23.7 1.0
CA A:ARG102 4.0 21.6 1.0
NE A:ARG191 4.1 28.2 1.0
CB A:ILE101 4.1 23.8 1.0
CB A:ALA100 4.1 16.9 1.0
CA A:ILE101 4.2 22.0 1.0
NH2 A:ARG191 4.2 26.1 1.0
C A:ALA100 4.2 20.7 1.0
C A:ILE101 4.2 20.8 1.0
CZ A:ARG102 4.3 25.5 1.0
CA A:ALA100 4.4 19.4 1.0
NE A:ARG102 4.5 24.1 1.0
CD A:ARG191 4.5 31.2 1.0
O2' A:UPG354 4.9 20.7 1.0
O A:ALA100 4.9 21.6 1.0
CD1 A:TYR261 5.0 20.9 1.0

Chlorine binding site 2 out of 2 in 1nzf

Go back to Chlorine Binding Sites List in 1nzf
Chlorine binding site 2 out of 2 in the T4 Phage Bgt-D100A Mutant in Complex with Udp-Glucose: Form II


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of T4 Phage Bgt-D100A Mutant in Complex with Udp-Glucose: Form II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl353

b:30.3
occ:1.00
NZ A:LYS166 3.1 24.3 1.0
O A:HOH402 3.2 23.5 1.0
N A:SER244 3.4 21.7 1.0
O A:HOH561 3.5 34.9 1.0
N A:VAL243 3.5 22.3 1.0
O A:MET240 3.6 25.1 1.0
C A:ASN241 3.7 24.2 1.0
O A:ASN241 3.7 24.8 1.0
OG A:SER244 3.8 21.6 1.0
CB A:SER244 3.9 20.9 1.0
CE A:LYS166 4.0 22.5 1.0
N A:MET242 4.0 23.5 1.0
CA A:VAL243 4.1 21.5 1.0
CB A:VAL243 4.1 20.3 1.0
CA A:ASN241 4.1 24.9 1.0
C A:VAL243 4.2 21.9 1.0
CA A:SER244 4.2 21.8 1.0
C A:MET242 4.2 22.6 1.0
CD A:LYS166 4.3 24.2 1.0
CA A:MET242 4.4 23.7 1.0
C A:MET240 4.6 24.4 1.0
OE2 A:GLU272 4.8 16.3 1.0
N A:ASN241 4.9 25.0 1.0
CG2 A:VAL243 5.0 19.2 1.0

Reference:

L.Lariviere, V.Gueguen-Chaignon, S.Morera. Crystal Structures of the T4 Phage Beta-Glucosyltransferase and the D100A Mutant in Complex with Udp-Glucose: Glucose Binding and Identification of the Catalytic Base For A Direct Displacement Mechanism. J.Mol.Biol. V. 330 1077 2003.
ISSN: ISSN 0022-2836
PubMed: 12860129
DOI: 10.1016/S0022-2836(03)00635-1
Page generated: Sat Dec 12 08:44:12 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy