Chlorine in PDB 1nzf: T4 Phage Bgt-D100A Mutant in Complex with Udp-Glucose: Form II

All present enzymatic activity of T4 Phage Bgt-D100A Mutant in Complex with Udp-Glucose: Form II:
2.4.1.27;

The structure of T4 Phage Bgt-D100A Mutant in Complex with Udp-Glucose: Form II, PDB code: 1nzf was solved by L.Lariviere, S.Morera, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	63.119, 72.958, 80.148, 90.00, 90.00, 90.00
R / Rfree (%)	18.3 / 22

The binding sites of Chlorine atom in the T4 Phage Bgt-D100A Mutant in Complex with Udp-Glucose: Form II (pdb code 1nzf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the T4 Phage Bgt-D100A Mutant in Complex with Udp-Glucose: Form II, PDB code: 1nzf:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the T4 Phage Bgt-D100A Mutant in Complex with Udp-Glucose: Form II


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of T4 Phage Bgt-D100A Mutant in Complex with Udp-Glucose: Form II within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl352 b:21.2 occ:1.00 OH A:TYR261 2.9 19.3 1.0 O A:HOH610 3.0 42.6 1.0 NH1 A:ARG102 3.2 23.8 1.0 N A:ARG102 3.3 21.1 1.0 CG A:ARG102 3.4 19.1 1.0 CB A:ARG102 3.6 21.1 1.0 CE1 A:TYR261 3.7 21.0 1.0 N A:ILE101 3.7 21.0 1.0 CZ A:TYR261 3.7 20.0 1.0 CD A:ARG102 3.7 21.9 1.0 CZ A:ARG191 3.8 26.9 1.0 NH1 A:ARG191 3.8 23.7 1.0 CA A:ARG102 4.0 21.6 1.0 NE A:ARG191 4.1 28.2 1.0 CB A:ILE101 4.1 23.8 1.0 CB A:ALA100 4.1 16.9 1.0 CA A:ILE101 4.2 22.0 1.0 NH2 A:ARG191 4.2 26.1 1.0 C A:ALA100 4.2 20.7 1.0 C A:ILE101 4.2 20.8 1.0 CZ A:ARG102 4.3 25.5 1.0 CA A:ALA100 4.4 19.4 1.0 NE A:ARG102 4.5 24.1 1.0 CD A:ARG191 4.5 31.2 1.0 O2' A:UPG354 4.9 20.7 1.0 O A:ALA100 4.9 21.6 1.0 CD1 A:TYR261 5.0 20.9 1.0

Chlorine binding site 2 out of 2 in the T4 Phage Bgt-D100A Mutant in Complex with Udp-Glucose: Form II


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of T4 Phage Bgt-D100A Mutant in Complex with Udp-Glucose: Form II within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl353 b:30.3 occ:1.00 NZ A:LYS166 3.1 24.3 1.0 O A:HOH402 3.2 23.5 1.0 N A:SER244 3.4 21.7 1.0 O A:HOH561 3.5 34.9 1.0 N A:VAL243 3.5 22.3 1.0 O A:MET240 3.6 25.1 1.0 C A:ASN241 3.7 24.2 1.0 O A:ASN241 3.7 24.8 1.0 OG A:SER244 3.8 21.6 1.0 CB A:SER244 3.9 20.9 1.0 CE A:LYS166 4.0 22.5 1.0 N A:MET242 4.0 23.5 1.0 CA A:VAL243 4.1 21.5 1.0 CB A:VAL243 4.1 20.3 1.0 CA A:ASN241 4.1 24.9 1.0 C A:VAL243 4.2 21.9 1.0 CA A:SER244 4.2 21.8 1.0 C A:MET242 4.2 22.6 1.0 CD A:LYS166 4.3 24.2 1.0 CA A:MET242 4.4 23.7 1.0 C A:MET240 4.6 24.4 1.0 OE2 A:GLU272 4.8 16.3 1.0 N A:ASN241 4.9 25.0 1.0 CG2 A:VAL243 5.0 19.2 1.0

L.Lariviere, V.Gueguen-Chaignon, S.Morera. Crystal Structures of the T4 Phage Beta-Glucosyltransferase and the D100A Mutant in Complex with Udp-Glucose: Glucose Binding and Identification of the Catalytic Base For A Direct Displacement Mechanism. J.Mol.Biol. V. 330 1077 2003.
ISSN: ISSN 0022-2836
PubMed: 12860129
DOI: 10.1016/S0022-2836(03)00635-1