Chlorine in PDB 1odl: Purine Nucleoside Phosphorylase From Thermus Thermophilus

The structure of Purine Nucleoside Phosphorylase From Thermus Thermophilus, PDB code: 1odl was solved by T.H.Tahirov, E.Inagaki, M.Miyano, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.99 / 2.10
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	132.002, 132.002, 170.145, 90.00, 90.00, 90.00
R / Rfree (%)	18.7 / 23.4

The binding sites of Chlorine atom in the Purine Nucleoside Phosphorylase From Thermus Thermophilus (pdb code 1odl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Purine Nucleoside Phosphorylase From Thermus Thermophilus, PDB code: 1odl:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in the Purine Nucleoside Phosphorylase From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Purine Nucleoside Phosphorylase From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1240 b:25.6 occ:1.00 O A:HOH2051 3.1 13.4 1.0 CG A:PRO57 3.1 17.5 1.0 N A:GLU15 3.4 11.8 1.0 CA A:ALA14 3.9 11.8 1.0 CB A:PRO57 3.9 8.6 1.0 CB A:ALA14 3.9 11.2 1.0 CG A:GLU15 4.0 29.1 1.0 C A:ALA14 4.1 11.9 1.0 CB A:GLU15 4.1 18.1 1.0 CA A:GLU15 4.4 14.3 1.0 CD A:PRO57 4.4 13.6 1.0 CD A:GLU15 4.5 33.0 1.0 O A:PRO57 4.7 13.8 1.0 OE2 A:GLU15 5.0 33.5 1.0

Chlorine binding site 2 out of 6 in the Purine Nucleoside Phosphorylase From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Purine Nucleoside Phosphorylase From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1240 b:21.0 occ:1.00 O B:HOH2048 3.0 10.1 1.0 N B:GLU15 3.3 14.7 1.0 O B:HOH2017 3.3 43.6 1.0 CB B:PRO57 3.8 11.7 1.0 CA B:ALA14 3.9 13.7 1.0 CB B:ALA14 3.9 13.6 1.0 CG B:GLU15 3.9 26.4 1.0 CB B:GLU15 3.9 17.1 1.0 C B:ALA14 4.1 15.3 1.0 CG B:PRO57 4.2 15.9 1.0 O B:HOH2003 4.2 43.4 1.0 CA B:GLU15 4.2 16.0 1.0 CD B:GLU15 4.4 31.2 1.0 OE2 B:GLU15 4.5 36.6 1.0 O B:PRO57 4.6 10.8 1.0 CD B:PRO57 4.6 15.5 1.0 NH2 B:ARG16 4.9 11.5 1.0 CA B:PRO57 5.0 14.9 1.0 O B:HOH2007 5.0 35.4 1.0 O B:HOH2064 5.0 36.2 1.0 N B:ARG16 5.0 14.1 1.0

Chlorine binding site 3 out of 6 in the Purine Nucleoside Phosphorylase From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Purine Nucleoside Phosphorylase From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1237 b:31.6 occ:1.00 O C:HOH2036 3.1 24.6 1.0 N C:GLU15 3.2 17.2 1.0 CG C:GLU15 3.7 38.2 1.0 CA C:ALA14 3.8 14.2 1.0 O C:HOH2005 3.8 37.3 1.0 CB C:GLU15 3.9 24.2 1.0 CB C:PRO57 4.0 22.4 1.0 C C:ALA14 4.0 16.7 1.0 CB C:ALA14 4.0 12.5 1.0 CA C:GLU15 4.2 18.8 1.0 CG C:PRO57 4.2 24.3 1.0 CD C:GLU15 4.4 44.7 1.0 O C:HOH2008 4.7 34.4 1.0 CD C:PRO57 4.7 23.4 1.0 OE1 C:GLU15 4.9 45.3 1.0 O C:PRO57 4.9 26.2 1.0 OE2 C:GLU15 4.9 49.5 1.0

Chlorine binding site 4 out of 6 in the Purine Nucleoside Phosphorylase From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Purine Nucleoside Phosphorylase From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl1238 b:41.4 occ:1.00 N D:GLU15 3.2 25.9 1.0 O D:HOH2009 3.2 39.8 1.0 CG D:PRO57 3.5 36.9 1.0 CA D:ALA14 3.7 24.8 1.0 CB D:ALA14 3.8 19.2 1.0 CB D:GLU15 3.8 23.1 1.0 CG D:GLU15 3.8 32.3 1.0 C D:ALA14 3.9 28.4 1.0 CA D:GLU15 4.1 24.4 1.0 CB D:PRO57 4.2 33.7 1.0 CD D:GLU15 4.3 39.4 1.0 OE2 D:GLU15 4.4 41.4 1.0 O D:PRO57 4.7 38.0 1.0 O D:HOH2005 4.8 28.7 1.0 CD D:PRO57 4.8 29.7 1.0 NH2 D:ARG16 4.9 41.5 1.0

Chlorine binding site 5 out of 6 in the Purine Nucleoside Phosphorylase From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Purine Nucleoside Phosphorylase From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ E:Cl1238 b:30.7 occ:1.00 N E:GLU15 3.2 19.8 1.0 O E:HOH2041 3.2 19.6 1.0 CB E:ALA14 3.6 19.5 1.0 CA E:ALA14 3.7 15.1 1.0 CB E:PRO57 3.8 17.6 1.0 C E:ALA14 3.9 19.1 1.0 CG E:GLU15 4.0 29.3 1.0 CB E:GLU15 4.0 21.9 1.0 CG E:PRO57 4.1 19.7 1.0 O E:HOH2011 4.2 36.4 1.0 CA E:GLU15 4.2 22.6 1.0 CD E:PRO57 4.6 15.7 1.0 O E:PRO57 4.6 17.3 1.0 CD E:GLU15 4.8 34.9 1.0 CA E:PRO57 5.0 19.5 1.0

Chlorine binding site 6 out of 6 in the Purine Nucleoside Phosphorylase From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Purine Nucleoside Phosphorylase From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ F:Cl1237 b:20.3 occ:1.00 O F:HOH2041 3.0 13.4 1.0 N F:GLU15 3.3 13.7 1.0 CB F:PRO57 3.7 12.9 1.0 CG F:GLU15 3.8 28.1 1.0 CA F:ALA14 3.9 16.4 1.0 CB F:GLU15 3.9 19.2 1.0 CB F:ALA14 4.0 11.5 1.0 C F:ALA14 4.1 15.8 1.0 CG F:PRO57 4.1 14.7 1.0 CA F:GLU15 4.2 15.8 1.0 CD F:GLU15 4.5 33.3 1.0 O F:PRO57 4.6 18.9 1.0 CD F:PRO57 4.6 14.1 1.0 OE2 F:GLU15 4.9 33.2 1.0 CA F:PRO57 4.9 15.5 1.0 NH2 F:ARG16 4.9 10.0 1.0

T.H.Tahirov, E.Inagaki, N.Ohshima, T.Kitao, C.Kuroishi, Y.Ukita, K.Takio, M.Kobayashi, S.Kuramitsu, S.Yokoyama, M.Miyano. Crystal Structure of Purine Nucleoside Phosphorylase From Thermus Thermophilus J.Mol.Biol. V. 337 1149 2004.
ISSN: ISSN 0022-2836
PubMed: 15046984
DOI: 10.1016/J.JMB.2004.02.016