Chlorine in PDB 1ogd: The Structure of Bacillus Subtilis Rbsd Complexed with D-Ribose

The structure of The Structure of Bacillus Subtilis Rbsd Complexed with D-Ribose, PDB code: 1ogd was solved by M.-S.Kim, B.-H.Oh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.95
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	123.515, 108.656, 83.308, 90.00, 128.68, 90.00
R / Rfree (%)	19.8 / 21.1

The binding sites of Chlorine atom in the The Structure of Bacillus Subtilis Rbsd Complexed with D-Ribose (pdb code 1ogd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the The Structure of Bacillus Subtilis Rbsd Complexed with D-Ribose, PDB code: 1ogd:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the The Structure of Bacillus Subtilis Rbsd Complexed with D-Ribose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Structure of Bacillus Subtilis Rbsd Complexed with D-Ribose within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1132 b:33.8 occ:1.00 O A:HOH2001 3.2 27.6 1.0 NZ A:LYS2 3.3 25.9 1.0 CD A:LYS2 3.6 28.9 1.0 CE A:LYS2 3.8 29.2 1.0 O A:HIS4 4.0 34.1 1.0 CA A:GLY5 4.3 31.9 1.0 CG A:LYS2 4.6 29.0 1.0 CB A:ALA12 4.6 20.9 1.0 C A:HIS4 4.8 33.5 1.0 N A:ILE6 4.9 28.6 1.0 N A:GLY5 4.9 33.8 1.0 C A:GLY5 5.0 30.4 1.0

Chlorine binding site 2 out of 2 in the The Structure of Bacillus Subtilis Rbsd Complexed with D-Ribose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Structure of Bacillus Subtilis Rbsd Complexed with D-Ribose within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl1133 b:30.5 occ:1.00 O D:HOH2002 3.2 26.5 1.0 NZ D:LYS2 3.3 24.4 1.0 CD D:LYS2 3.7 28.8 1.0 CE D:LYS2 3.9 26.4 1.0 O D:HIS4 3.9 32.0 1.0 CA D:GLY5 4.3 28.2 1.0 CB D:ALA12 4.6 18.8 1.0 CG D:LYS2 4.7 29.3 1.0 C D:HIS4 4.8 31.3 1.0 N D:ILE6 4.8 26.1 1.0 C D:GLY5 4.9 27.0 1.0 N D:GLY5 5.0 30.4 1.0

M.-S.Kim, J.Shin, W.Lee, H.-S.Lee, B.-H.Oh. Crystal Structures of Rbsd Leading to the Identification of Cytoplasmic Sugar-Binding Proteins with A Novel Folding Architecture J.Biol.Chem. V. 278 28173 2003.
ISSN: ISSN 0021-9258
PubMed: 12738765
DOI: 10.1074/JBC.M304523200