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Chlorine in PDB 1ogf: The Structure of Bacillus Subtilis Rbsd Complexed with Glycerol

Protein crystallography data

The structure of The Structure of Bacillus Subtilis Rbsd Complexed with Glycerol, PDB code: 1ogf was solved by M.-S.Kim, B.-H.Oh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.30
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 122.314, 106.222, 82.648, 90.00, 128.50, 90.00
R / Rfree (%) 21.5 / 25

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Structure of Bacillus Subtilis Rbsd Complexed with Glycerol (pdb code 1ogf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the The Structure of Bacillus Subtilis Rbsd Complexed with Glycerol, PDB code: 1ogf:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1ogf

Go back to Chlorine Binding Sites List in 1ogf
Chlorine binding site 1 out of 2 in the The Structure of Bacillus Subtilis Rbsd Complexed with Glycerol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Structure of Bacillus Subtilis Rbsd Complexed with Glycerol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1133

b:31.2
occ:1.00
O A:HOH2005 3.2 21.7 1.0
NZ A:LYS2 3.5 24.0 1.0
CD A:LYS2 3.7 26.2 1.0
CE A:LYS2 4.0 23.8 1.0
O A:HIS4 4.2 34.0 1.0
CA A:GLY5 4.4 29.0 1.0
CG A:LYS2 4.6 24.4 1.0
CB A:ALA12 4.6 19.8 1.0
C A:HIS4 4.9 34.0 1.0

Chlorine binding site 2 out of 2 in 1ogf

Go back to Chlorine Binding Sites List in 1ogf
Chlorine binding site 2 out of 2 in the The Structure of Bacillus Subtilis Rbsd Complexed with Glycerol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Structure of Bacillus Subtilis Rbsd Complexed with Glycerol within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl1134

b:24.6
occ:1.00
O D:HOH2007 3.2 23.8 1.0
NZ D:LYS2 3.3 24.9 1.0
CD D:LYS2 3.6 24.8 1.0
CE D:LYS2 3.7 23.3 1.0
O D:HIS4 4.1 27.7 1.0
CB D:ALA12 4.3 16.5 1.0
CA D:GLY5 4.3 25.0 1.0
CG D:LYS2 4.6 23.4 1.0
N D:ILE6 4.8 23.4 1.0
C D:HIS4 4.9 28.9 1.0
C D:GLY5 5.0 24.6 1.0
CA D:ALA12 5.0 15.6 1.0

Reference:

M.-S.Kim, J.Shin, W.Lee, H.-S.Lee, B.-H.Oh. Crystal Structures of Rbsd Leading to the Identification of Cytoplasmic Sugar-Binding Proteins with A Novel Folding Architecture J.Biol.Chem. V. 278 28173 2003.
ISSN: ISSN 0021-9258
PubMed: 12738765
DOI: 10.1074/JBC.M304523200
Page generated: Sat Dec 12 08:44:55 2020

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