Chlorine in PDB 1okb: Crystal Structure of Uracil-Dna Glycosylase From Atlantic Cod (Gadus Morhua)

All present enzymatic activity of Crystal Structure of Uracil-Dna Glycosylase From Atlantic Cod (Gadus Morhua):
3.2.2.3;

The structure of Crystal Structure of Uracil-Dna Glycosylase From Atlantic Cod (Gadus Morhua), PDB code: 1okb was solved by I.Leiros, E.Moe, O.Lanes, A.O.Smalas, N.P.Willassen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	12.0 / 1.9
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	68.580, 67.189, 68.644, 90.00, 119.86, 90.00
R / Rfree (%)	18.61 / 20.57

The binding sites of Chlorine atom in the Crystal Structure of Uracil-Dna Glycosylase From Atlantic Cod (Gadus Morhua) (pdb code 1okb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Uracil-Dna Glycosylase From Atlantic Cod (Gadus Morhua), PDB code: 1okb:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Uracil-Dna Glycosylase From Atlantic Cod (Gadus Morhua)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Uracil-Dna Glycosylase From Atlantic Cod (Gadus Morhua) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1306 b:33.8 occ:1.00 O A:HOH2025 2.8 20.6 1.0 O A:HOH2024 2.9 45.6 1.0 NH1 A:ARG113 3.5 15.5 1.0 N A:VAL118 3.5 18.6 1.0 CG A:ARG113 3.8 18.8 1.0 CB A:ARG113 3.9 18.9 1.0 O A:VAL118 3.9 18.9 1.0 O A:ARG113 4.0 23.6 1.0 O A:HIS116 4.0 22.0 1.0 CA A:ARG113 4.1 21.4 1.0 CD A:ARG113 4.2 17.1 1.0 CB A:VAL118 4.2 16.3 1.0 O A:HOH2032 4.3 31.1 1.0 CA A:VAL118 4.3 17.2 1.0 CA A:THR117 4.3 20.4 1.0 C A:THR117 4.4 18.7 1.0 C A:ARG113 4.5 23.4 1.0 C A:VAL118 4.6 17.8 1.0 CZ A:ARG113 4.6 18.6 1.0 CG2 A:VAL118 4.7 15.4 1.0 NE A:ARG113 4.9 18.8 1.0 C A:HIS116 5.0 22.9 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Uracil-Dna Glycosylase From Atlantic Cod (Gadus Morhua)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Uracil-Dna Glycosylase From Atlantic Cod (Gadus Morhua) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1306 b:34.5 occ:1.00 O B:HOH2027 2.8 21.2 1.0 O B:HOH2023 2.8 49.0 1.0 N B:VAL118 3.5 17.6 1.0 NH1 B:ARG113 3.5 14.8 1.0 CG B:ARG113 3.8 18.8 1.0 CB B:ARG113 3.9 19.1 1.0 O B:VAL118 3.9 16.9 1.0 O B:HIS116 4.0 21.8 1.0 O B:ARG113 4.0 23.5 1.0 CA B:ARG113 4.1 21.3 1.0 CB B:VAL118 4.2 15.1 1.0 CD B:ARG113 4.2 18.3 1.0 CA B:THR117 4.2 20.3 1.0 CA B:VAL118 4.3 16.5 1.0 O B:HOH2032 4.3 30.4 1.0 C B:THR117 4.4 19.0 1.0 C B:ARG113 4.5 23.4 1.0 C B:VAL118 4.5 16.8 1.0 CZ B:ARG113 4.6 18.3 1.0 CG2 B:VAL118 4.7 14.7 1.0 NE B:ARG113 4.9 18.0 1.0 C B:HIS116 4.9 22.9 1.0

I.Leiros, E.Moe, O.Lanes, A.O.Smalas, N.P.Willassen. The Crystal Structure of Uracil-Dna Glycosylase From Atlantic Cod (Gadus Morhua) Reveals Cold-Adaptation Features Acta Crystallogr.,Sect.D V. 59 1357 2003.
ISSN: ISSN 0907-4449
PubMed: 12876336
DOI: 10.1107/S0907444903011144