Chlorine in PDB 1pml: Kringle-Kringle Interactions in Multimer Kringle Structures
Enzymatic activity of Kringle-Kringle Interactions in Multimer Kringle Structures
All present enzymatic activity of Kringle-Kringle Interactions in Multimer Kringle Structures:
3.4.21.68;
Protein crystallography data
The structure of Kringle-Kringle Interactions in Multimer Kringle Structures, PDB code: 1pml
was solved by
K.Padmanabhan,
A.Tulinsky,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
8.00 /
2.38
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
54.800,
63.580,
46.580,
90.00,
106.70,
90.00
|
R / Rfree (%)
|
n/a /
n/a
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Kringle-Kringle Interactions in Multimer Kringle Structures
(pdb code 1pml). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the
Kringle-Kringle Interactions in Multimer Kringle Structures, PDB code: 1pml:
Jump to Chlorine binding site number:
1;
2;
3;
Chlorine binding site 1 out
of 3 in 1pml
Go back to
Chlorine Binding Sites List in 1pml
Chlorine binding site 1 out
of 3 in the Kringle-Kringle Interactions in Multimer Kringle Structures
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Kringle-Kringle Interactions in Multimer Kringle Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl289
b:18.1
occ:1.00
|
N
|
A:TYR35
|
3.1
|
18.2
|
1.0
|
ND2
|
C:ASN26
|
3.3
|
18.6
|
1.0
|
N
|
A:VAL34
|
3.4
|
19.4
|
1.0
|
CB
|
A:TYR35
|
3.5
|
16.2
|
1.0
|
CD2
|
A:TYR35
|
3.6
|
17.3
|
1.0
|
CE1
|
A:HIS64
|
3.7
|
16.1
|
1.0
|
CA
|
A:TYR35
|
3.8
|
17.6
|
1.0
|
O
|
C:HOH311
|
3.9
|
24.5
|
1.0
|
CB
|
A:LYS33
|
3.9
|
19.9
|
1.0
|
CG
|
A:TYR35
|
4.0
|
17.2
|
1.0
|
CB
|
A:VAL34
|
4.0
|
17.8
|
1.0
|
NE2
|
A:HIS64
|
4.0
|
13.8
|
1.0
|
CA
|
A:VAL34
|
4.0
|
18.9
|
1.0
|
C
|
A:VAL34
|
4.1
|
18.5
|
1.0
|
CG
|
C:ASN26
|
4.2
|
17.3
|
1.0
|
C
|
A:LYS33
|
4.3
|
20.7
|
1.0
|
OD1
|
C:ASN26
|
4.3
|
17.2
|
1.0
|
CB
|
C:LYS48
|
4.4
|
13.7
|
1.0
|
CA
|
A:LYS33
|
4.4
|
20.8
|
1.0
|
CH2
|
A:TRP62
|
4.5
|
11.1
|
1.0
|
C
|
A:TYR35
|
4.5
|
17.6
|
1.0
|
CD
|
C:LYS48
|
4.6
|
13.0
|
1.0
|
CD
|
A:LYS33
|
4.6
|
19.4
|
1.0
|
CG
|
A:LYS33
|
4.6
|
18.9
|
1.0
|
CG
|
C:LYS48
|
4.7
|
13.2
|
1.0
|
O
|
A:TYR35
|
4.7
|
18.8
|
1.0
|
CE2
|
A:TYR35
|
4.7
|
16.8
|
1.0
|
CA
|
C:LYS48
|
4.8
|
14.5
|
1.0
|
O
|
C:LYS48
|
4.9
|
16.4
|
1.0
|
CG2
|
A:VAL34
|
4.9
|
15.3
|
1.0
|
ND1
|
A:HIS64
|
4.9
|
13.7
|
1.0
|
CG1
|
A:VAL34
|
4.9
|
14.4
|
1.0
|
CE
|
A:LYS33
|
4.9
|
20.0
|
1.0
|
|
Chlorine binding site 2 out
of 3 in 1pml
Go back to
Chlorine Binding Sites List in 1pml
Chlorine binding site 2 out
of 3 in the Kringle-Kringle Interactions in Multimer Kringle Structures
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Kringle-Kringle Interactions in Multimer Kringle Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl290
b:15.5
occ:1.00
|
N
|
B:TYR35
|
3.2
|
15.5
|
1.0
|
CG
|
B:LYS33
|
3.5
|
18.9
|
1.0
|
N
|
B:VAL34
|
3.5
|
17.1
|
1.0
|
CE1
|
B:HIS64
|
3.6
|
13.4
|
1.0
|
CD2
|
B:TYR35
|
3.8
|
15.3
|
1.0
|
CA
|
B:VAL34
|
4.0
|
16.2
|
1.0
|
CB
|
B:VAL34
|
4.0
|
15.4
|
1.0
|
CB
|
B:TYR35
|
4.0
|
14.7
|
1.0
|
C
|
B:VAL34
|
4.1
|
16.4
|
1.0
|
CB
|
B:LYS33
|
4.1
|
20.9
|
1.0
|
CA
|
B:TYR35
|
4.2
|
16.2
|
1.0
|
NE2
|
B:HIS64
|
4.2
|
14.1
|
1.0
|
CG
|
B:TYR35
|
4.4
|
15.1
|
1.0
|
C
|
B:LYS33
|
4.4
|
18.3
|
1.0
|
O
|
B:TYR35
|
4.5
|
15.8
|
1.0
|
CH2
|
B:TRP62
|
4.5
|
13.8
|
1.0
|
CA
|
B:LYS33
|
4.6
|
19.7
|
1.0
|
CG2
|
B:VAL34
|
4.7
|
13.6
|
1.0
|
ND1
|
B:HIS64
|
4.7
|
12.4
|
1.0
|
C
|
B:TYR35
|
4.7
|
16.2
|
1.0
|
CE2
|
B:TYR35
|
4.8
|
14.1
|
1.0
|
CD
|
B:LYS33
|
4.8
|
19.6
|
1.0
|
CE
|
B:LYS33
|
4.9
|
20.7
|
1.0
|
|
Chlorine binding site 3 out
of 3 in 1pml
Go back to
Chlorine Binding Sites List in 1pml
Chlorine binding site 3 out
of 3 in the Kringle-Kringle Interactions in Multimer Kringle Structures
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Kringle-Kringle Interactions in Multimer Kringle Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl291
b:16.2
occ:1.00
|
N
|
C:VAL34
|
3.2
|
19.5
|
1.0
|
N
|
C:TYR35
|
3.2
|
16.8
|
1.0
|
ND2
|
B:ASN26
|
3.3
|
16.0
|
1.0
|
O
|
B:HOH307
|
3.5
|
13.5
|
1.0
|
CE1
|
C:HIS64
|
3.5
|
17.4
|
1.0
|
CA
|
C:VAL34
|
3.9
|
17.7
|
1.0
|
CB
|
C:LYS33
|
3.9
|
19.4
|
1.0
|
CB
|
C:VAL34
|
3.9
|
17.5
|
1.0
|
CD2
|
C:TYR35
|
4.0
|
20.2
|
1.0
|
NE2
|
C:HIS64
|
4.0
|
15.9
|
1.0
|
CB
|
C:TYR35
|
4.0
|
17.4
|
1.0
|
C
|
C:VAL34
|
4.1
|
17.4
|
1.0
|
CA
|
C:TYR35
|
4.1
|
17.4
|
1.0
|
C
|
C:LYS33
|
4.1
|
19.7
|
1.0
|
OD1
|
B:ASN26
|
4.1
|
13.9
|
1.0
|
CB
|
B:LYS48
|
4.2
|
12.9
|
1.0
|
CG
|
B:ASN26
|
4.2
|
15.7
|
1.0
|
CA
|
C:LYS33
|
4.3
|
20.0
|
1.0
|
CD
|
C:LYS33
|
4.3
|
17.3
|
1.0
|
CG
|
C:TYR35
|
4.5
|
19.9
|
1.0
|
CG
|
B:LYS48
|
4.5
|
10.1
|
1.0
|
CG
|
C:LYS33
|
4.5
|
17.2
|
1.0
|
CH2
|
C:TRP62
|
4.5
|
13.1
|
1.0
|
CA
|
B:LYS48
|
4.6
|
14.1
|
1.0
|
O
|
C:TYR35
|
4.6
|
17.6
|
1.0
|
CD
|
B:LYS48
|
4.7
|
9.4
|
1.0
|
CG2
|
C:VAL34
|
4.7
|
16.2
|
1.0
|
ND1
|
C:HIS64
|
4.7
|
15.5
|
1.0
|
C
|
C:TYR35
|
4.7
|
17.8
|
1.0
|
O
|
B:LYS48
|
4.8
|
17.9
|
1.0
|
C
|
B:LYS48
|
4.9
|
15.7
|
1.0
|
|
Reference:
K.Padmanabhan,
T.P.Wu,
K.G.Ravichandran,
A.Tulinsky.
Kringle-Kringle Interactions in Multimer Kringle Structures. Protein Sci. V. 3 898 1994.
ISSN: ISSN 0961-8368
PubMed: 8069221
Page generated: Sat Jul 20 01:14:37 2024
|