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Chlorine in PDB 1pml: Kringle-Kringle Interactions in Multimer Kringle Structures

Enzymatic activity of Kringle-Kringle Interactions in Multimer Kringle Structures

All present enzymatic activity of Kringle-Kringle Interactions in Multimer Kringle Structures:
3.4.21.68;

Protein crystallography data

The structure of Kringle-Kringle Interactions in Multimer Kringle Structures, PDB code: 1pml was solved by K.Padmanabhan, A.Tulinsky, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.38
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 54.800, 63.580, 46.580, 90.00, 106.70, 90.00
R / Rfree (%) n/a / n/a

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Kringle-Kringle Interactions in Multimer Kringle Structures (pdb code 1pml). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Kringle-Kringle Interactions in Multimer Kringle Structures, PDB code: 1pml:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 1pml

Go back to Chlorine Binding Sites List in 1pml
Chlorine binding site 1 out of 3 in the Kringle-Kringle Interactions in Multimer Kringle Structures


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Kringle-Kringle Interactions in Multimer Kringle Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl289

b:18.1
occ:1.00
N A:TYR35 3.1 18.2 1.0
ND2 C:ASN26 3.3 18.6 1.0
N A:VAL34 3.4 19.4 1.0
CB A:TYR35 3.5 16.2 1.0
CD2 A:TYR35 3.6 17.3 1.0
CE1 A:HIS64 3.7 16.1 1.0
CA A:TYR35 3.8 17.6 1.0
O C:HOH311 3.9 24.5 1.0
CB A:LYS33 3.9 19.9 1.0
CG A:TYR35 4.0 17.2 1.0
CB A:VAL34 4.0 17.8 1.0
NE2 A:HIS64 4.0 13.8 1.0
CA A:VAL34 4.0 18.9 1.0
C A:VAL34 4.1 18.5 1.0
CG C:ASN26 4.2 17.3 1.0
C A:LYS33 4.3 20.7 1.0
OD1 C:ASN26 4.3 17.2 1.0
CB C:LYS48 4.4 13.7 1.0
CA A:LYS33 4.4 20.8 1.0
CH2 A:TRP62 4.5 11.1 1.0
C A:TYR35 4.5 17.6 1.0
CD C:LYS48 4.6 13.0 1.0
CD A:LYS33 4.6 19.4 1.0
CG A:LYS33 4.6 18.9 1.0
CG C:LYS48 4.7 13.2 1.0
O A:TYR35 4.7 18.8 1.0
CE2 A:TYR35 4.7 16.8 1.0
CA C:LYS48 4.8 14.5 1.0
O C:LYS48 4.9 16.4 1.0
CG2 A:VAL34 4.9 15.3 1.0
ND1 A:HIS64 4.9 13.7 1.0
CG1 A:VAL34 4.9 14.4 1.0
CE A:LYS33 4.9 20.0 1.0

Chlorine binding site 2 out of 3 in 1pml

Go back to Chlorine Binding Sites List in 1pml
Chlorine binding site 2 out of 3 in the Kringle-Kringle Interactions in Multimer Kringle Structures


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Kringle-Kringle Interactions in Multimer Kringle Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl290

b:15.5
occ:1.00
N B:TYR35 3.2 15.5 1.0
CG B:LYS33 3.5 18.9 1.0
N B:VAL34 3.5 17.1 1.0
CE1 B:HIS64 3.6 13.4 1.0
CD2 B:TYR35 3.8 15.3 1.0
CA B:VAL34 4.0 16.2 1.0
CB B:VAL34 4.0 15.4 1.0
CB B:TYR35 4.0 14.7 1.0
C B:VAL34 4.1 16.4 1.0
CB B:LYS33 4.1 20.9 1.0
CA B:TYR35 4.2 16.2 1.0
NE2 B:HIS64 4.2 14.1 1.0
CG B:TYR35 4.4 15.1 1.0
C B:LYS33 4.4 18.3 1.0
O B:TYR35 4.5 15.8 1.0
CH2 B:TRP62 4.5 13.8 1.0
CA B:LYS33 4.6 19.7 1.0
CG2 B:VAL34 4.7 13.6 1.0
ND1 B:HIS64 4.7 12.4 1.0
C B:TYR35 4.7 16.2 1.0
CE2 B:TYR35 4.8 14.1 1.0
CD B:LYS33 4.8 19.6 1.0
CE B:LYS33 4.9 20.7 1.0

Chlorine binding site 3 out of 3 in 1pml

Go back to Chlorine Binding Sites List in 1pml
Chlorine binding site 3 out of 3 in the Kringle-Kringle Interactions in Multimer Kringle Structures


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Kringle-Kringle Interactions in Multimer Kringle Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl291

b:16.2
occ:1.00
N C:VAL34 3.2 19.5 1.0
N C:TYR35 3.2 16.8 1.0
ND2 B:ASN26 3.3 16.0 1.0
O B:HOH307 3.5 13.5 1.0
CE1 C:HIS64 3.5 17.4 1.0
CA C:VAL34 3.9 17.7 1.0
CB C:LYS33 3.9 19.4 1.0
CB C:VAL34 3.9 17.5 1.0
CD2 C:TYR35 4.0 20.2 1.0
NE2 C:HIS64 4.0 15.9 1.0
CB C:TYR35 4.0 17.4 1.0
C C:VAL34 4.1 17.4 1.0
CA C:TYR35 4.1 17.4 1.0
C C:LYS33 4.1 19.7 1.0
OD1 B:ASN26 4.1 13.9 1.0
CB B:LYS48 4.2 12.9 1.0
CG B:ASN26 4.2 15.7 1.0
CA C:LYS33 4.3 20.0 1.0
CD C:LYS33 4.3 17.3 1.0
CG C:TYR35 4.5 19.9 1.0
CG B:LYS48 4.5 10.1 1.0
CG C:LYS33 4.5 17.2 1.0
CH2 C:TRP62 4.5 13.1 1.0
CA B:LYS48 4.6 14.1 1.0
O C:TYR35 4.6 17.6 1.0
CD B:LYS48 4.7 9.4 1.0
CG2 C:VAL34 4.7 16.2 1.0
ND1 C:HIS64 4.7 15.5 1.0
C C:TYR35 4.7 17.8 1.0
O B:LYS48 4.8 17.9 1.0
C B:LYS48 4.9 15.7 1.0

Reference:

K.Padmanabhan, T.P.Wu, K.G.Ravichandran, A.Tulinsky. Kringle-Kringle Interactions in Multimer Kringle Structures. Protein Sci. V. 3 898 1994.
ISSN: ISSN 0961-8368
PubMed: 8069221
Page generated: Sat Jul 20 01:14:37 2024

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