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Chlorine in PDB 1pum: Mistletoe Lectin I in Complex with Galactose

Protein crystallography data

The structure of Mistletoe Lectin I in Complex with Galactose, PDB code: 1pum was solved by R.Krauspenhaar, W.Voelter, S.Stoeva, A.Mikhailov, N.Konareva, C.Betzel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.30
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 106.826, 106.826, 310.951, 90.00, 90.00, 120.00
R / Rfree (%) 20.9 / 24.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Mistletoe Lectin I in Complex with Galactose (pdb code 1pum). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Mistletoe Lectin I in Complex with Galactose, PDB code: 1pum:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1pum

Go back to Chlorine Binding Sites List in 1pum
Chlorine binding site 1 out of 2 in the Mistletoe Lectin I in Complex with Galactose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Mistletoe Lectin I in Complex with Galactose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1026

b:68.0
occ:0.50
N A:SER5 3.1 43.8 1.0
OG A:SER5 3.5 53.4 1.0
CA A:LEU4 3.7 44.7 1.0
C A:LEU4 3.9 44.2 1.0
O A:SER5 3.9 45.9 1.0
O A:ARG3 4.0 47.4 1.0
CA A:SER5 4.1 46.2 1.0
CB A:SER5 4.3 48.6 1.0
CB A:LEU4 4.5 45.6 1.0
C A:SER5 4.5 45.1 1.0
N A:LEU4 4.7 45.4 1.0
C A:ARG3 4.8 46.5 1.0
CG A:LEU4 5.0 46.4 1.0

Chlorine binding site 2 out of 2 in 1pum

Go back to Chlorine Binding Sites List in 1pum
Chlorine binding site 2 out of 2 in the Mistletoe Lectin I in Complex with Galactose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Mistletoe Lectin I in Complex with Galactose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1027

b:68.7
occ:1.00
OD1 A:ASN216 3.2 46.8 1.0
ND1 A:HIS208 3.6 37.3 1.0
NE2 A:GLN205 3.7 35.6 1.0
CG A:ASN216 4.3 43.2 1.0
CB A:ASN215 4.5 38.9 1.0
CG A:HIS208 4.5 36.7 1.0
CB A:HIS208 4.5 34.6 1.0
CE1 A:HIS208 4.5 38.2 1.0
CD A:GLN205 4.7 34.6 1.0
OE1 A:GLN205 4.8 35.6 1.0
CB A:ASN216 5.0 39.0 1.0
O A:HOH7794 5.0 28.1 1.0

Reference:

R.Mikeska, R.Wacker, R.Arni, T.P.Singh, A.Mikhailov, A.Gabdoulkhakov, W.Voelter, C.Betzel. Mistletoe Lectin I in Complex with Galactose and Lactose Reveals Distinct Sugar-Binding Properties Acta Crystallogr.,Sect.F V. 61 17 2005.
ISSN: ESSN 1744-3091
PubMed: 16508080
DOI: 10.1107/S1744309104031501
Page generated: Sat Dec 12 08:46:15 2020

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