Atomistry » Chlorine » PDB 1ps9-1qhs » 1q17
Atomistry »
  Chlorine »
    PDB 1ps9-1qhs »
      1q17 »

Chlorine in PDB 1q17: Structure of the Yeast HST2 Protein Deacetylase in Ternary Complex with 2'-O-Acetyl Adp Ribose and Histone Peptide

Protein crystallography data

The structure of Structure of the Yeast HST2 Protein Deacetylase in Ternary Complex with 2'-O-Acetyl Adp Ribose and Histone Peptide, PDB code: 1q17 was solved by K.Zhao, X.Chai, R.Marmorstein, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.88 / 2.70
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 146.159, 109.682, 85.825, 90.00, 104.90, 90.00
R / Rfree (%) 18.6 / 24.7

Other elements in 1q17:

The structure of Structure of the Yeast HST2 Protein Deacetylase in Ternary Complex with 2'-O-Acetyl Adp Ribose and Histone Peptide also contains other interesting chemical elements:

Zinc (Zn) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of the Yeast HST2 Protein Deacetylase in Ternary Complex with 2'-O-Acetyl Adp Ribose and Histone Peptide (pdb code 1q17). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Structure of the Yeast HST2 Protein Deacetylase in Ternary Complex with 2'-O-Acetyl Adp Ribose and Histone Peptide, PDB code: 1q17:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 1q17

Go back to Chlorine Binding Sites List in 1q17
Chlorine binding site 1 out of 4 in the Structure of the Yeast HST2 Protein Deacetylase in Ternary Complex with 2'-O-Acetyl Adp Ribose and Histone Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the Yeast HST2 Protein Deacetylase in Ternary Complex with 2'-O-Acetyl Adp Ribose and Histone Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl701

b:56.5
occ:1.00
NH2 C:ARG240 2.8 0.6 1.0
NE C:ARG240 3.4 98.3 1.0
CZ C:ARG240 3.5 0.7 1.0
NH2 C:ARG204 3.7 78.1 1.0
N C:ARG240 4.2 49.3 1.0
CA C:PRO239 4.2 41.5 1.0
CZ C:ARG204 4.6 82.9 1.0
NE C:ARG204 4.6 80.3 1.0
CB C:PRO239 4.6 37.6 1.0
CD C:ARG240 4.7 81.0 1.0
C C:PRO239 4.7 46.2 1.0
NH1 C:ARG240 4.8 97.8 1.0
CB C:ARG240 5.0 49.8 1.0

Chlorine binding site 2 out of 4 in 1q17

Go back to Chlorine Binding Sites List in 1q17
Chlorine binding site 2 out of 4 in the Structure of the Yeast HST2 Protein Deacetylase in Ternary Complex with 2'-O-Acetyl Adp Ribose and Histone Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the Yeast HST2 Protein Deacetylase in Ternary Complex with 2'-O-Acetyl Adp Ribose and Histone Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl702

b:48.4
occ:1.00
NE1 B:TRP202 3.6 47.2 1.0
NZ B:LYS26 3.8 50.8 1.0
NZ B:LYS206 4.0 56.9 1.0
CZ2 B:TRP202 4.3 45.9 1.0
CE2 B:TRP202 4.3 46.9 1.0
CG B:LYS26 4.4 48.5 1.0
CE B:LYS206 4.5 54.5 1.0
CE B:LYS26 4.6 60.9 1.0
NZ B:LYS110 4.7 50.6 1.0
CD1 B:TRP202 4.8 47.0 1.0

Chlorine binding site 3 out of 4 in 1q17

Go back to Chlorine Binding Sites List in 1q17
Chlorine binding site 3 out of 4 in the Structure of the Yeast HST2 Protein Deacetylase in Ternary Complex with 2'-O-Acetyl Adp Ribose and Histone Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of the Yeast HST2 Protein Deacetylase in Ternary Complex with 2'-O-Acetyl Adp Ribose and Histone Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl703

b:46.1
occ:1.00
NH2 A:ARG204 2.7 62.3 1.0
NH1 A:ARG240 2.8 88.3 1.0
N A:ARG240 3.8 58.2 1.0
CZ A:ARG240 3.9 88.1 1.0
CZ A:ARG204 3.9 64.0 1.0
CG A:ARG240 4.0 72.6 1.0
CA A:PRO239 4.2 45.3 1.0
NH1 A:ARG204 4.2 63.9 1.0
CB A:ARG240 4.4 62.2 1.0
NH2 A:ARG240 4.5 90.4 1.0
C A:PRO239 4.5 46.9 1.0
NE A:ARG240 4.7 84.0 1.0
CB A:PRO239 4.7 45.7 1.0
CA A:ARG240 4.7 61.0 1.0
CD A:ARG240 4.8 80.2 1.0

Chlorine binding site 4 out of 4 in 1q17

Go back to Chlorine Binding Sites List in 1q17
Chlorine binding site 4 out of 4 in the Structure of the Yeast HST2 Protein Deacetylase in Ternary Complex with 2'-O-Acetyl Adp Ribose and Histone Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of the Yeast HST2 Protein Deacetylase in Ternary Complex with 2'-O-Acetyl Adp Ribose and Histone Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl704

b:43.5
occ:1.00
NH2 B:ARG204 2.9 63.2 1.0
NH2 B:ARG240 3.0 0.1 1.0
NE B:ARG240 3.0 97.0 1.0
CZ B:ARG240 3.4 98.6 1.0
N B:ARG240 3.7 43.5 1.0
CA B:PRO239 4.1 30.4 1.0
CZ B:ARG204 4.2 67.8 1.0
CD B:ARG240 4.2 82.7 1.0
CG B:ARG240 4.3 67.3 1.0
CB B:ARG240 4.3 55.7 1.0
C B:PRO239 4.4 37.8 1.0
CB B:PRO239 4.5 29.8 1.0
CA B:ARG240 4.6 49.1 1.0
NH1 B:ARG240 4.7 97.5 1.0
NE B:ARG204 4.8 62.2 1.0

Reference:

K.Zhao, X.Chai, R.Marmorstein. Structure of the Yeast HST2 Protein Deacetylase in Ternary Complex with 2'-O-Acetyl Adp Ribose and Histone Peptide. Structure V. 11 1403 2003.
ISSN: ISSN 0969-2126
PubMed: 14604530
DOI: 10.1016/J.STR.2003.09.016
Page generated: Sat Dec 12 08:46:25 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy