Chlorine in PDB 1q8c: A Conserved Hypothetical Protein From Mycoplasma Genitalium Shows Structural Homology to Nusb Proteins

The structure of A Conserved Hypothetical Protein From Mycoplasma Genitalium Shows Structural Homology to Nusb Proteins, PDB code: 1q8c was solved by J.Liu, H.Yokota, R.Kim, S.-H.Kim, Berkeley Structural Genomics Center(Bsgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.00
Space group	P 41
Cell size a, b, c (Å), α, β, γ (°)	41.401, 41.401, 99.008, 90.00, 90.00, 90.00
R / Rfree (%)	25.4 / 27.2

The structure of A Conserved Hypothetical Protein From Mycoplasma Genitalium Shows Structural Homology to Nusb Proteins also contains other interesting chemical elements:

Iodine	(I)	7 atoms
Sodium	(Na)	3 atoms

The binding sites of Chlorine atom in the A Conserved Hypothetical Protein From Mycoplasma Genitalium Shows Structural Homology to Nusb Proteins (pdb code 1q8c). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the A Conserved Hypothetical Protein From Mycoplasma Genitalium Shows Structural Homology to Nusb Proteins, PDB code: 1q8c:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the A Conserved Hypothetical Protein From Mycoplasma Genitalium Shows Structural Homology to Nusb Proteins


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of A Conserved Hypothetical Protein From Mycoplasma Genitalium Shows Structural Homology to Nusb Proteins within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl159 b:60.9 occ:1.00 O A:HOH180 3.1 62.1 1.0 CG A:GLN16 3.9 44.2 1.0 OE1 A:GLN16 4.1 46.2 1.0 CB A:GLN16 4.3 44.1 1.0 CD1 A:ILE19 4.3 43.5 1.0 CG2 A:ILE19 4.4 44.1 1.0 NE2 A:HIS133 4.4 45.2 1.0 CD A:GLN16 4.5 45.6 1.0 CA A:GLN16 4.5 43.8 1.0 O A:HOH224 4.7 58.3 1.0 CB A:ILE19 4.7 43.4 1.0 O A:GLN16 4.9 44.0 1.0

Chlorine binding site 2 out of 2 in the A Conserved Hypothetical Protein From Mycoplasma Genitalium Shows Structural Homology to Nusb Proteins


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of A Conserved Hypothetical Protein From Mycoplasma Genitalium Shows Structural Homology to Nusb Proteins within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl160 b:59.7 occ:1.00 NE A:ARG51 3.5 45.4 1.0 NH2 A:ARG51 3.8 45.3 1.0 O A:HOH224 4.0 58.3 1.0 CA A:ALA20 4.0 43.5 1.0 CZ A:ARG51 4.1 45.6 1.0 CB A:ALA20 4.2 43.5 1.0 CG A:ARG51 4.4 44.8 1.0 CD A:ARG51 4.5 44.8 1.0 N A:ALA20 4.5 43.2 1.0 OH A:TYR46 4.7 48.8 1.0 CB A:GLU23 4.8 44.4 1.0 CG2 A:ILE19 4.8 44.1 1.0 C A:ILE19 4.9 43.3 1.0 O A:ILE19 4.9 42.4 1.0

J.Liu, H.Yokota, R.Kim, S.-H.Kim. A Conserved Hypothetical Protein From Mycoplasma Genitalium Shows Structural Homology to Nusb Proteins Proteins V. 55 1082 2004.
ISSN: ISSN 0887-3585
PubMed: 15146506
DOI: 10.1002/PROT.20119