Chlorine in PDB 1r6n: HPV11 E2 Tad Complex Crystal Structure

The structure of HPV11 E2 Tad Complex Crystal Structure, PDB code: 1r6n was solved by Y.Wang, R.Coulombe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.40
Space group	P 41
Cell size a, b, c (Å), α, β, γ (°)	60.456, 60.456, 82.526, 90.00, 90.00, 90.00
R / Rfree (%)	21 / 26.6

The binding sites of Chlorine atom in the HPV11 E2 Tad Complex Crystal Structure (pdb code 1r6n). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the HPV11 E2 Tad Complex Crystal Structure, PDB code: 1r6n:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the HPV11 E2 Tad Complex Crystal Structure


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of HPV11 E2 Tad Complex Crystal Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1111 b:18.8 occ:1.00 CL1 A:4341111 0.0 18.8 1.0 C51 A:4341111 1.7 34.0 1.0 C49 A:4341111 2.7 35.4 1.0 C53 A:4341111 2.7 34.1 1.0 CL2 A:4341111 3.2 21.2 1.0 CB A:ALQ1113 3.7 62.7 1.0 CE1 A:TYR19 3.9 52.2 1.0 C2 A:4341111 4.0 37.8 1.0 C55 A:4341111 4.0 32.8 1.0 CZ A:TYR19 4.1 52.6 1.0 C17 A:4341112 4.3 60.9 1.0 C3 A:4341112 4.3 58.2 1.0 OXT A:ALQ1113 4.3 64.4 1.0 CD1 A:TYR19 4.3 53.2 1.0 OH A:TYR19 4.5 56.1 1.0 C57 A:4341111 4.5 35.5 1.0 C15 A:4341112 4.6 61.1 1.0 C19 A:4341112 4.6 62.4 1.0 S A:DMS1114 4.7 0.0 1.0 CE2 A:TYR19 4.7 50.0 1.0 CG A:TYR19 4.9 49.9 1.0 CA A:ALQ1113 5.0 63.5 1.0 C A:ALQ1113 5.0 65.0 1.0

Chlorine binding site 2 out of 4 in the HPV11 E2 Tad Complex Crystal Structure


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of HPV11 E2 Tad Complex Crystal Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1111 b:21.2 occ:1.00 CL2 A:4341111 0.0 21.2 1.0 C53 A:4341111 1.7 34.1 1.0 C55 A:4341111 2.7 32.8 1.0 C51 A:4341111 2.8 34.0 1.0 CL1 A:4341111 3.2 18.8 1.0 C19 A:4341112 3.4 62.4 1.0 C21 A:4341112 3.6 61.5 1.0 C57 A:4341111 4.0 35.5 1.0 C49 A:4341111 4.0 35.4 1.0 C17 A:4341112 4.1 60.9 1.0 C23 A:4341112 4.5 61.7 1.0 C2 A:4341111 4.6 37.8 1.0 C3 A:4341112 4.6 58.2 1.0 C15 A:4341112 4.9 61.1 1.0

Chlorine binding site 3 out of 4 in the HPV11 E2 Tad Complex Crystal Structure


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of HPV11 E2 Tad Complex Crystal Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1112 b:61.1 occ:1.00 CL1 A:4341112 0.0 61.1 1.0 C51 A:4341112 1.7 58.0 1.0 C49 A:4341112 2.7 56.1 1.0 C53 A:4341112 2.7 57.4 1.0 ND2 A:ASN71 3.0 41.4 1.0 CL2 A:4341112 3.2 54.8 1.0 CD2 A:TYR99 3.7 45.6 1.0 C2 A:4341112 4.0 58.3 1.0 CG A:ASN71 4.0 42.2 1.0 C55 A:4341112 4.0 55.6 1.0 CE2 A:TYR99 4.0 45.4 1.0 CB A:ASN71 4.2 40.6 1.0 CG A:TYR99 4.4 42.7 1.0 C57 A:4341112 4.5 57.0 1.0 C33 A:4341112 4.6 63.1 1.0 O A:HOH1125 4.8 50.9 1.0 CB A:TYR99 4.8 39.3 1.0 N30 A:4341112 4.9 60.8 1.0 CZ A:TYR99 4.9 46.5 1.0 CG A:LYS68 4.9 45.2 1.0 C31 A:4341112 5.0 63.3 1.0

Chlorine binding site 4 out of 4 in the HPV11 E2 Tad Complex Crystal Structure


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of HPV11 E2 Tad Complex Crystal Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1112 b:54.8 occ:1.00 CL2 A:4341112 0.0 54.8 1.0 C53 A:4341112 1.7 57.4 1.0 C55 A:4341112 2.7 55.6 1.0 C51 A:4341112 2.7 58.0 1.0 CL1 A:4341112 3.2 61.1 1.0 CZ3 A:TRP33 3.5 36.2 1.0 CB A:ASN71 3.8 40.6 1.0 CH2 A:TRP33 3.9 35.6 1.0 O A:LYS68 3.9 46.1 1.0 C57 A:4341112 4.0 57.0 1.0 C49 A:4341112 4.0 56.1 1.0 CA A:LYS68 4.2 46.4 1.0 CB A:LYS68 4.3 46.0 1.0 ND2 A:ASN71 4.3 41.4 1.0 CG2 A:ILE36 4.4 41.8 1.0 N A:ALA72 4.4 39.0 1.0 C A:LYS68 4.5 45.9 1.0 CG A:LYS68 4.5 45.2 1.0 C2 A:4341112 4.5 58.3 1.0 CE3 A:TRP33 4.6 35.2 1.0 CG A:ASN71 4.6 42.2 1.0 C A:ASN71 4.7 40.5 1.0 CA A:ASN71 4.8 40.9 1.0 CE A:LYS68 4.9 47.1 1.0 CA A:ALA72 4.9 38.8 1.0 CB A:TYR99 5.0 39.3 1.0

Y.Wang, R.Coulombe, D.R.Cameron, L.Thauvette, M.-J.Massariol, L.M.Amon, D.Fink, S.Titolo, E.Welchner, C.Yoakim, J.Archambault, P.W.White. Crystal Structure of the E2 Transactivation Domain of Human Papillomavirus Type 11 Bound to A Protein Interaction Inhibitor J.Biol.Chem. V. 279 6976 2004.
ISSN: ISSN 0021-9258
PubMed: 14634007
DOI: 10.1074/JBC.M311376200