Atomistry » Chlorine » PDB 1quo-1rki » 1rb6
Atomistry »
  Chlorine »
    PDB 1quo-1rki »
      1rb6 »

Chlorine in PDB 1rb6: Antiparallel Trimer of GCN4-Leucine Zipper Core Mutant As N16A Tetragonal Form

Protein crystallography data

The structure of Antiparallel Trimer of GCN4-Leucine Zipper Core Mutant As N16A Tetragonal Form, PDB code: 1rb6 was solved by J.Holton, T.Alber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.90
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 64.947, 64.947, 78.012, 90.00, 90.00, 90.00
R / Rfree (%) 22.3 / 24.1

Other elements in 1rb6:

The structure of Antiparallel Trimer of GCN4-Leucine Zipper Core Mutant As N16A Tetragonal Form also contains other interesting chemical elements:

Potassium (K) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Antiparallel Trimer of GCN4-Leucine Zipper Core Mutant As N16A Tetragonal Form (pdb code 1rb6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 9 binding sites of Chlorine where determined in the Antiparallel Trimer of GCN4-Leucine Zipper Core Mutant As N16A Tetragonal Form, PDB code: 1rb6:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Chlorine binding site 1 out of 9 in 1rb6

Go back to Chlorine Binding Sites List in 1rb6
Chlorine binding site 1 out of 9 in the Antiparallel Trimer of GCN4-Leucine Zipper Core Mutant As N16A Tetragonal Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Antiparallel Trimer of GCN4-Leucine Zipper Core Mutant As N16A Tetragonal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl806

b:65.9
occ:1.00
 NZ B:LYS27 3.0 35.6 0.5
NH2 A:ARG25 3.0 43.3 1.0
NE A:ARG25 3.0 42.8 1.0
O A:HOH947 3.3 36.3 1.0
O B:HOH942 3.3 45.1 1.0
CZ A:ARG25 3.4 44.2 1.0
CE B:LYS27 3.4 35.6 0.5
CG A:GLU22 3.8 26.0 1.0
CD A:ARG25 4.1 39.0 1.0
OE1 A:GLU22 4.3 31.2 1.0
CB A:GLU22 4.4 25.1 1.0
CA A:GLU22 4.4 24.2 1.0
CD B:LYS27 4.6 35.7 0.5
CD A:GLU22 4.6 29.1 1.0
NH1 A:ARG25 4.7 47.7 1.0
CB A:ARG25 4.8 28.0 1.0
CG A:ARG25 4.9 34.1 1.0
O B:HOH938 4.9 44.3 1.0

Chlorine binding site 2 out of 9 in 1rb6

Go back to Chlorine Binding Sites List in 1rb6
Chlorine binding site 2 out of 9 in the Antiparallel Trimer of GCN4-Leucine Zipper Core Mutant As N16A Tetragonal Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Antiparallel Trimer of GCN4-Leucine Zipper Core Mutant As N16A Tetragonal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl808

b:50.1
occ:1.00
 SD B:MET2 3.8 32.7 0.3
NH2 A:ARG1 4.0 34.0 1.0
CD A:ARG1 4.0 33.6 1.0
CB A:ARG1 4.2 33.0 1.0
CE B:MET2 4.3 32.4 0.5
O A:HOH920 4.5 31.9 1.0
CE B:MET2 4.5 32.4 0.5
CG A:ARG1 4.7 33.3 1.0
CZ A:ARG1 4.8 34.1 1.0
NE A:ARG1 4.9 34.2 1.0

Chlorine binding site 3 out of 9 in 1rb6

Go back to Chlorine Binding Sites List in 1rb6
Chlorine binding site 3 out of 9 in the Antiparallel Trimer of GCN4-Leucine Zipper Core Mutant As N16A Tetragonal Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Antiparallel Trimer of GCN4-Leucine Zipper Core Mutant As N16A Tetragonal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl810

b:44.7
occ:1.00
 OE1 A:GLU10 3.3 28.6 1.0
CD A:GLU10 3.6 27.4 1.0
CG A:GLU10 3.9 25.9 1.0
OE2 A:GLU10 4.4 29.5 1.0
O A:HOH936 4.5 45.8 1.0
CB A:GLU10 4.6 21.7 1.0
O A:HOH938 4.7 39.0 1.0

Chlorine binding site 4 out of 9 in 1rb6

Go back to Chlorine Binding Sites List in 1rb6
Chlorine binding site 4 out of 9 in the Antiparallel Trimer of GCN4-Leucine Zipper Core Mutant As N16A Tetragonal Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Antiparallel Trimer of GCN4-Leucine Zipper Core Mutant As N16A Tetragonal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl803

b:22.7
occ:0.50
 CL B:CL803 0.0 22.7 0.5
CL B:CL803 1.3 27.6 0.5
O C:HOH904 3.0 27.3 1.0
NZ C:LYS15 3.2 25.6 1.0
NZ B:LYS15 3.4 33.9 1.0
OE2 C:GLU11 3.4 37.0 1.0
CD C:GLU11 3.5 33.9 1.0
O B:HOH902 3.6 25.8 0.5
CD B:LYS15 3.8 28.5 1.0
OE1 C:GLU11 3.9 35.5 1.0
CG C:GLU11 4.0 28.7 1.0
CD C:LYS15 4.0 21.5 1.0
CE C:LYS15 4.0 24.2 1.0
CE B:LYS15 4.2 30.5 1.0
CL B:CL811 4.3 30.6 1.0
CB C:GLU11 4.7 22.3 1.0
O B:HOH902 4.9 18.8 0.5

Chlorine binding site 5 out of 9 in 1rb6

Go back to Chlorine Binding Sites List in 1rb6
Chlorine binding site 5 out of 9 in the Antiparallel Trimer of GCN4-Leucine Zipper Core Mutant As N16A Tetragonal Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Antiparallel Trimer of GCN4-Leucine Zipper Core Mutant As N16A Tetragonal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl803

b:27.6
occ:0.50
 CL B:CL803 0.0 27.6 0.5
CL B:CL803 1.3 22.7 0.5
O C:HOH904 2.9 27.3 1.0
O B:HOH902 3.4 25.8 0.5
CD B:LYS15 3.5 28.5 1.0
NZ C:LYS15 3.5 25.6 1.0
CD C:LYS15 3.5 21.5 1.0
NZ B:LYS15 3.6 33.9 1.0
CD2 B:LEU12 4.0 15.9 1.0
CE C:LYS15 4.0 24.2 1.0
CE B:LYS15 4.2 30.5 1.0
CG C:GLU11 4.3 28.7 1.0
CD C:GLU11 4.3 33.9 1.0
OE2 C:GLU11 4.3 37.0 1.0
CA C:LEU12 4.5 16.2 1.0
N C:LEU12 4.6 15.1 1.0
CL B:CL811 4.6 30.6 1.0
CD1 C:LEU12 4.7 14.6 1.0
CG B:LYS15 4.7 24.1 1.0
CB B:LYS15 4.7 21.4 1.0
CG C:LYS15 4.7 19.1 1.0
OE1 C:GLU11 4.8 35.5 1.0
C C:GLU11 4.8 19.6 1.0
O B:HOH902 4.9 18.8 0.5
CB C:LEU12 4.9 14.3 1.0
CB C:GLU11 4.9 22.3 1.0
O C:GLU11 4.9 18.2 1.0

Chlorine binding site 6 out of 9 in 1rb6

Go back to Chlorine Binding Sites List in 1rb6
Chlorine binding site 6 out of 9 in the Antiparallel Trimer of GCN4-Leucine Zipper Core Mutant As N16A Tetragonal Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Antiparallel Trimer of GCN4-Leucine Zipper Core Mutant As N16A Tetragonal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl804

b:28.9
occ:1.00
 OE2 B:GLU20 1.8 28.0 0.0
CD B:GLU20 2.6 27.5 0.0
O B:HOH934 3.0 43.2 1.0
OE1 B:GLU20 3.1 28.0 0.0
CE A:LYS15 3.3 17.0 0.5
O B:HOH903 3.6 33.1 0.5
NZ A:LYS15 3.7 18.6 0.5
CG B:GLU20 3.8 28.9 1.0
CB B:GLU20 3.9 21.7 1.0
CD1 B:TYR17 3.9 23.3 1.0
CA B:TYR17 4.0 19.1 1.0
NZ A:LYS15 4.1 18.8 0.5
CE A:LYS15 4.3 17.4 0.5
CD A:LYS15 4.4 19.4 1.0
O A:HOH910 4.5 19.7 1.0
CB B:TYR17 4.5 18.8 1.0
O B:HOH924 4.6 40.2 1.0
N B:TYR17 4.6 17.3 1.0
CG B:TYR17 4.7 22.4 1.0
O B:TYR17 4.7 18.2 1.0
O B:ALA16 4.8 19.7 1.0
CE1 B:TYR17 4.8 26.6 1.0
O A:HOH957 4.9 55.2 1.0
C B:TYR17 4.9 18.3 1.0
C B:ALA16 5.0 17.8 1.0

Chlorine binding site 7 out of 9 in 1rb6

Go back to Chlorine Binding Sites List in 1rb6
Chlorine binding site 7 out of 9 in the Antiparallel Trimer of GCN4-Leucine Zipper Core Mutant As N16A Tetragonal Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Antiparallel Trimer of GCN4-Leucine Zipper Core Mutant As N16A Tetragonal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl805

b:40.6
occ:1.00
 O C:HOH908 2.9 22.3 1.0
O C:HOH925 3.1 59.9 1.0
NZ B:LYS8 3.2 22.1 1.0
O C:HOH918 3.2 34.0 1.0
CD C:LYS15 3.6 21.5 1.0
CE B:LYS8 3.6 20.1 1.0
CG C:LYS15 3.7 19.1 1.0
CE C:LYS15 3.7 24.2 1.0
O B:HOH902 3.9 18.8 0.5
CD B:LYS8 4.0 16.3 1.0
CB C:LYS15 4.3 16.5 1.0
NZ C:LYS15 4.5 25.6 1.0
O B:HOH902 4.6 25.8 0.5
O B:HOH935 4.7 61.9 1.0
CG B:LYS8 4.8 18.7 1.0
K C:K801 4.9 31.0 1.0
CA C:LYS15 5.0 16.7 1.0

Chlorine binding site 8 out of 9 in 1rb6

Go back to Chlorine Binding Sites List in 1rb6
Chlorine binding site 8 out of 9 in the Antiparallel Trimer of GCN4-Leucine Zipper Core Mutant As N16A Tetragonal Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Antiparallel Trimer of GCN4-Leucine Zipper Core Mutant As N16A Tetragonal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl809

b:45.9
occ:1.00
 O B:HOH907 2.8 33.8 1.0
ND1 B:HIS18 3.2 23.5 1.0
ND2 B:ASN21 3.5 31.0 1.0
NH2 B:ARG25 3.6 39.4 1.0
CB B:ASN21 3.7 24.3 1.0
CE1 B:HIS18 4.1 20.8 1.0
CG B:HIS18 4.1 21.0 1.0
CG B:ASN21 4.1 27.8 1.0
NH1 B:ARG25 4.2 37.3 1.0
CB B:HIS18 4.2 19.1 1.0
O B:HIS18 4.3 18.1 1.0
CA B:HIS18 4.3 17.9 1.0
CZ B:ARG25 4.4 38.0 1.0
C B:HIS18 4.8 19.0 1.0
O B:HOH906 5.0 40.6 1.0

Chlorine binding site 9 out of 9 in 1rb6

Go back to Chlorine Binding Sites List in 1rb6
Chlorine binding site 9 out of 9 in the Antiparallel Trimer of GCN4-Leucine Zipper Core Mutant As N16A Tetragonal Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Antiparallel Trimer of GCN4-Leucine Zipper Core Mutant As N16A Tetragonal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl811

b:30.6
occ:1.00
 O C:HOH904 2.9 27.3 1.0
O B:HOH917 3.0 24.9 1.0
O C:HOH937 3.5 66.8 1.0
CD C:LYS8 3.9 24.5 0.0
CB B:LYS15 4.0 21.4 1.0
CB C:LYS8 4.1 21.7 1.0
CD1 B:LEU19 4.1 18.6 1.0
CG B:LYS15 4.1 24.1 1.0
CD B:LYS15 4.2 28.5 1.0
CG C:LYS8 4.2 25.2 1.0
CD2 B:LEU19 4.2 16.8 1.0
CG B:LEU19 4.2 18.2 1.0
CL B:CL803 4.3 22.7 0.5
CL B:CL803 4.6 27.6 0.5
O B:HOH905 4.7 32.0 1.0
CE B:LYS15 4.7 30.5 1.0
CE C:LYS8 4.8 24.7 0.0
CA B:LYS15 4.8 20.0 1.0
O B:LYS15 4.9 16.6 1.0
O B:HOH912 4.9 24.4 1.0

Reference:

J.Holton, T.Alber. Automated Protein Crystal Structure Determination Using Elves. Proc.Natl.Acad.Sci.Usa V. 101 1537 2004.
ISSN: ISSN 0027-8424
PubMed: 14752198
DOI: 10.1073/PNAS.0306241101
Page generated: Sat Jul 20 01:52:24 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy