Chlorine in PDB 1rdi: Mannose-Binding Protein, Subtilisin Digest Fragment Complex with Alpha-Methyl-L-Fucopyranoside

The structure of Mannose-Binding Protein, Subtilisin Digest Fragment Complex with Alpha-Methyl-L-Fucopyranoside, PDB code: 1rdi was solved by K.K.-S.Ng, K.Drickamer, W.I.Weis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	60.700, 75.100, 57.300, 90.00, 90.00, 90.00
R / Rfree (%)	19.6 / 24.4

The structure of Mannose-Binding Protein, Subtilisin Digest Fragment Complex with Alpha-Methyl-L-Fucopyranoside also contains other interesting chemical elements:

Calcium

(Ca)

4 atoms

The binding sites of Chlorine atom in the Mannose-Binding Protein, Subtilisin Digest Fragment Complex with Alpha-Methyl-L-Fucopyranoside (pdb code 1rdi). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Mannose-Binding Protein, Subtilisin Digest Fragment Complex with Alpha-Methyl-L-Fucopyranoside, PDB code: 1rdi:

Chlorine binding site 1 out of 1 in the Mannose-Binding Protein, Subtilisin Digest Fragment Complex with Alpha-Methyl-L-Fucopyranoside


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Mannose-Binding Protein, Subtilisin Digest Fragment Complex with Alpha-Methyl-L-Fucopyranoside within 5.0Å range: probe atom residue distance (Å) B Occ 1:Cl3 b:20.6 occ:1.00 O 1:HOH243 3.0 18.1 1.0 O 1:HOH342 3.1 40.7 1.0 N 1:ASN199 3.1 11.9 1.0 N 1:CYS214 3.1 8.6 1.0 O 1:HOH245 3.2 38.6 1.0 O 1:HOH244 3.2 19.6 0.7 CA 1:PRO213 3.6 11.4 1.0 CB 1:ASN199 3.6 10.8 1.0 SG 1:CYS214 3.8 15.0 1.0 ND2 1:ASN199 3.8 10.6 1.0 CG 1:ASN199 3.8 10.6 1.0 C 1:PRO213 3.9 9.9 1.0 CA 1:ASN199 3.9 9.4 1.0 O 1:GLY197 4.0 17.6 1.0 CB 1:CYS214 4.0 15.9 1.0 CA 1:GLU198 4.0 13.1 1.0 C 1:GLU198 4.0 11.1 1.0 CA 1:CYS214 4.2 12.0 1.0 O 1:VAL212 4.2 8.4 1.0 C 1:GLY197 4.4 17.2 1.0 N 1:GLU198 4.4 13.8 1.0 CB 1:PRO213 4.5 10.4 1.0 N 1:CYS200 4.5 7.9 1.0 C 1:ASN199 4.5 8.5 1.0 OD1 1:ASN199 4.6 11.3 1.0 N 1:PRO213 4.7 12.3 1.0 OE1 1:GLN167 4.8 32.0 1.0 C 1:VAL212 4.8 11.2 1.0

K.K.Ng, K.Drickamer, W.I.Weis. Structural Analysis of Monosaccharide Recognition By Rat Liver Mannose-Binding Protein. J.Biol.Chem. V. 271 663 1996.
ISSN: ISSN 0021-9258
PubMed: 8557671
DOI: 10.1074/JBC.271.2.663