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Chlorine in PDB 1rs4: Dhna, 7,8-Dihydroneopterin Aldolase Complexed with 3-(5-Amino-7- Hydroxy-[1,2,3]Triazolo[4,5-D]Pyrimidin-2-Yl)-N-(3,5-Dichlorobenzyl)- Benzamide

Enzymatic activity of Dhna, 7,8-Dihydroneopterin Aldolase Complexed with 3-(5-Amino-7- Hydroxy-[1,2,3]Triazolo[4,5-D]Pyrimidin-2-Yl)-N-(3,5-Dichlorobenzyl)- Benzamide

All present enzymatic activity of Dhna, 7,8-Dihydroneopterin Aldolase Complexed with 3-(5-Amino-7- Hydroxy-[1,2,3]Triazolo[4,5-D]Pyrimidin-2-Yl)-N-(3,5-Dichlorobenzyl)- Benzamide:
4.1.2.25;

Protein crystallography data

The structure of Dhna, 7,8-Dihydroneopterin Aldolase Complexed with 3-(5-Amino-7- Hydroxy-[1,2,3]Triazolo[4,5-D]Pyrimidin-2-Yl)-N-(3,5-Dichlorobenzyl)- Benzamide, PDB code: 1rs4 was solved by W.J.Sanders, V.L.Nienaber, C.G.Lerner, J.O.Mccall, S.M.Merrick, S.J.Swanson, J.E.Harlan, V.S.Stoll, G.F.Stamper, S.F.Betz, K.R.Condroski, R.P.Meadows, J.M.Severin, K.A.Walter, P.Magdalinos, C.G.Jakob, R.Wagner, B.A.Beutel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.27 / 2.70
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 60.947, 60.947, 123.689, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Dhna, 7,8-Dihydroneopterin Aldolase Complexed with 3-(5-Amino-7- Hydroxy-[1,2,3]Triazolo[4,5-D]Pyrimidin-2-Yl)-N-(3,5-Dichlorobenzyl)- Benzamide (pdb code 1rs4). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Dhna, 7,8-Dihydroneopterin Aldolase Complexed with 3-(5-Amino-7- Hydroxy-[1,2,3]Triazolo[4,5-D]Pyrimidin-2-Yl)-N-(3,5-Dichlorobenzyl)- Benzamide, PDB code: 1rs4:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1rs4

Go back to Chlorine Binding Sites List in 1rs4
Chlorine binding site 1 out of 2 in the Dhna, 7,8-Dihydroneopterin Aldolase Complexed with 3-(5-Amino-7- Hydroxy-[1,2,3]Triazolo[4,5-D]Pyrimidin-2-Yl)-N-(3,5-Dichlorobenzyl)- Benzamide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Dhna, 7,8-Dihydroneopterin Aldolase Complexed with 3-(5-Amino-7- Hydroxy-[1,2,3]Triazolo[4,5-D]Pyrimidin-2-Yl)-N-(3,5-Dichlorobenzyl)- Benzamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1001

b:20.0
occ:1.00
CL1 A:45P1001 0.0 20.0 1.0
C24 A:45P1001 1.7 20.0 1.0
C23 A:45P1001 2.7 20.0 1.0
C26 A:45P1001 2.7 20.0 1.0
CG A:PRO106 4.0 27.4 1.0
C27 A:45P1001 4.0 20.0 1.0
C22 A:45P1001 4.0 20.0 1.0
CD A:PRO106 4.3 26.1 1.0
C29 A:45P1001 4.5 20.0 1.0

Chlorine binding site 2 out of 2 in 1rs4

Go back to Chlorine Binding Sites List in 1rs4
Chlorine binding site 2 out of 2 in the Dhna, 7,8-Dihydroneopterin Aldolase Complexed with 3-(5-Amino-7- Hydroxy-[1,2,3]Triazolo[4,5-D]Pyrimidin-2-Yl)-N-(3,5-Dichlorobenzyl)- Benzamide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Dhna, 7,8-Dihydroneopterin Aldolase Complexed with 3-(5-Amino-7- Hydroxy-[1,2,3]Triazolo[4,5-D]Pyrimidin-2-Yl)-N-(3,5-Dichlorobenzyl)- Benzamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1001

b:20.0
occ:1.00
CL2 A:45P1001 0.0 20.0 1.0
C27 A:45P1001 1.7 20.0 1.0
C26 A:45P1001 2.7 20.0 1.0
C29 A:45P1001 2.7 20.0 1.0
C22 A:45P1001 4.0 20.0 1.0
C24 A:45P1001 4.0 20.0 1.0
C23 A:45P1001 4.5 20.0 1.0

Reference:

W.J.Sanders, V.L.Nienaber, C.G.Lerner, J.O.Mccall, S.M.Merrick, S.J.Swanson, J.E.Harlan, V.S.Stoll, G.F.Stamper, S.F.Betz, K.R.Condroski, R.P.Meadows, J.M.Severin, K.A.Walter, P.Magdalinos, C.G.Jakob, R.Wagner, B.A.Beutel. Discovery of Potent Inhibitors of Dihydroneopterin Aldolase Using Crystalead High-Throughput X-Ray Crystallographic Screening and Structure-Directed Lead Optimization. J.Med.Chem. V. 47 1709 2004.
ISSN: ISSN 0022-2623
PubMed: 15027862
DOI: 10.1021/JM030497Y
Page generated: Sat Jul 20 01:57:49 2024

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