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Chlorine in PDB 1s4o: Crystal Structure of Yeast ALPHA1,2-Mannosyltransferase KRE2P/MNT1P: Binary Complex with Gdp/Mn

Enzymatic activity of Crystal Structure of Yeast ALPHA1,2-Mannosyltransferase KRE2P/MNT1P: Binary Complex with Gdp/Mn

All present enzymatic activity of Crystal Structure of Yeast ALPHA1,2-Mannosyltransferase KRE2P/MNT1P: Binary Complex with Gdp/Mn:
2.4.1.131;

Protein crystallography data

The structure of Crystal Structure of Yeast ALPHA1,2-Mannosyltransferase KRE2P/MNT1P: Binary Complex with Gdp/Mn, PDB code: 1s4o was solved by Y.D.Lobsanov, P.A.Romero, B.Sleno, B.Yu, P.Yip, A.Herscovics, P.L.Howell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.42 / 2.01
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 60.694, 101.068, 62.036, 90.00, 98.81, 90.00
R / Rfree (%) 19.7 / 25

Other elements in 1s4o:

The structure of Crystal Structure of Yeast ALPHA1,2-Mannosyltransferase KRE2P/MNT1P: Binary Complex with Gdp/Mn also contains other interesting chemical elements:

Manganese (Mn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Yeast ALPHA1,2-Mannosyltransferase KRE2P/MNT1P: Binary Complex with Gdp/Mn (pdb code 1s4o). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Yeast ALPHA1,2-Mannosyltransferase KRE2P/MNT1P: Binary Complex with Gdp/Mn, PDB code: 1s4o:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 1s4o

Go back to Chlorine Binding Sites List in 1s4o
Chlorine binding site 1 out of 4 in the Crystal Structure of Yeast ALPHA1,2-Mannosyltransferase KRE2P/MNT1P: Binary Complex with Gdp/Mn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Yeast ALPHA1,2-Mannosyltransferase KRE2P/MNT1P: Binary Complex with Gdp/Mn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl708

b:39.5
occ:1.00
 N A:TYR192 3.3 21.1 1.0
CD2 A:TYR192 3.6 24.5 1.0
CB A:SER191 3.7 24.5 1.0
O A:HOH1104 3.9 26.7 1.0
CA A:SER191 3.9 22.2 1.0
O A:HOH1053 4.0 38.4 1.0
C A:SER191 4.0 21.6 1.0
CB A:TYR192 4.1 19.3 1.0
CA A:TYR192 4.2 20.6 1.0
CG A:TYR192 4.3 22.7 1.0
CE2 A:TYR192 4.5 24.4 1.0
O A:TYR192 4.6 20.5 1.0
OG A:SER191 4.7 25.7 1.0
NE2 A:GLN198 4.8 21.4 1.0
C A:TYR192 5.0 21.7 1.0

Chlorine binding site 2 out of 4 in 1s4o

Go back to Chlorine Binding Sites List in 1s4o
Chlorine binding site 2 out of 4 in the Crystal Structure of Yeast ALPHA1,2-Mannosyltransferase KRE2P/MNT1P: Binary Complex with Gdp/Mn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Yeast ALPHA1,2-Mannosyltransferase KRE2P/MNT1P: Binary Complex with Gdp/Mn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl702

b:29.3
occ:1.00
 O A:HOH988 2.8 21.2 1.0
O B:HOH955 3.0 20.0 1.0
N B:TYR214 3.0 22.0 1.0
N A:TYR419 3.3 16.3 1.0
CA B:TYR214 3.5 23.2 1.0
CB A:TYR419 3.5 17.9 1.0
CD1 B:ILE213 3.9 18.9 1.0
N A:GLY418 3.9 19.0 1.0
OE1 A:GLN417 3.9 27.8 1.0
CA A:TYR419 4.0 18.4 1.0
C B:ILE213 4.1 21.5 1.0
CB A:GLN417 4.1 23.3 1.0
C A:GLY418 4.2 18.6 1.0
CA A:GLY418 4.2 18.6 1.0
CA B:ILE213 4.3 22.2 1.0
CD1 B:TYR214 4.3 26.5 1.0
C B:TYR214 4.3 22.6 1.0
N B:GLY215 4.4 22.7 1.0
C A:GLN417 4.4 21.6 1.0
O B:TYR212 4.6 21.5 1.0
CG1 B:ILE213 4.6 19.7 1.0
CB B:TYR214 4.7 24.7 1.0
CG B:TYR214 4.8 24.5 1.0
O B:ALA209 4.8 24.0 1.0
CA A:GLN417 4.8 22.0 1.0
CG A:TYR419 4.8 19.9 1.0
CD A:GLN417 4.8 26.0 1.0
CG A:GLN417 4.9 23.6 1.0
O A:HOH970 5.0 22.2 1.0

Chlorine binding site 3 out of 4 in 1s4o

Go back to Chlorine Binding Sites List in 1s4o
Chlorine binding site 3 out of 4 in the Crystal Structure of Yeast ALPHA1,2-Mannosyltransferase KRE2P/MNT1P: Binary Complex with Gdp/Mn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Yeast ALPHA1,2-Mannosyltransferase KRE2P/MNT1P: Binary Complex with Gdp/Mn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl703

b:35.8
occ:1.00
 O B:HOH1133 2.7 31.5 1.0
O A:HOH903 3.0 14.8 1.0
N A:TYR214 3.1 18.4 1.0
N B:TYR419 3.3 13.6 1.0
CB B:TYR419 3.5 14.7 1.0
CA A:TYR214 3.6 17.4 1.0
CD1 A:ILE213 3.7 14.2 1.0
OE1 B:GLN417 3.8 28.9 1.0
N B:GLY418 3.8 13.9 1.0
CB B:GLN417 4.0 19.7 1.0
CA B:TYR419 4.0 15.4 1.0
C A:ILE213 4.1 17.4 1.0
O B:HOH1076 4.2 32.0 1.0
CA B:GLY418 4.2 14.2 1.0
CA A:ILE213 4.3 17.1 1.0
C B:GLY418 4.3 13.9 1.0
CD1 A:TYR214 4.3 22.9 1.0
C B:GLN417 4.4 15.8 1.0
CG1 A:ILE213 4.5 14.1 1.0
C A:TYR214 4.5 19.8 1.0
N A:GLY215 4.5 19.8 1.0
CD B:GLN417 4.7 25.9 1.0
CA B:GLN417 4.7 16.2 1.0
O A:TYR212 4.7 20.1 1.0
CG B:TYR419 4.8 18.5 1.0
CG B:GLN417 4.8 21.1 1.0
O A:ALA209 4.8 22.7 1.0
CB A:TYR214 4.8 19.8 1.0
CG A:TYR214 4.8 21.7 1.0
CE1 B:PHE414 4.9 12.9 1.0
CE1 A:TYR214 4.9 24.0 1.0

Chlorine binding site 4 out of 4 in 1s4o

Go back to Chlorine Binding Sites List in 1s4o
Chlorine binding site 4 out of 4 in the Crystal Structure of Yeast ALPHA1,2-Mannosyltransferase KRE2P/MNT1P: Binary Complex with Gdp/Mn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Yeast ALPHA1,2-Mannosyltransferase KRE2P/MNT1P: Binary Complex with Gdp/Mn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl704

b:45.9
occ:1.00
 CB B:SER191 3.3 22.6 1.0
N B:TYR192 3.4 24.6 1.0
CA B:SER191 3.6 23.3 1.0
CD2 B:TYR192 3.7 23.5 1.0
O B:HOH1086 3.7 30.2 1.0
C B:SER191 4.0 23.9 1.0
CB B:TYR192 4.3 24.4 1.0
O B:HOH1104 4.3 35.9 1.0
CA B:TYR192 4.4 24.9 1.0
OG B:SER191 4.4 21.7 1.0
CG B:TYR192 4.4 24.4 1.0
CE2 B:TYR192 4.5 26.2 1.0
O B:TYR192 4.8 25.4 1.0

Reference:

Y.D.Lobsanov, P.A.Romero, B.Sleno, B.Yu, P.Yip, A.Herscovics, P.L.Howell. Structure of KRE2P/MNT1P: A Yeast {Alpha}1,2-Mannosyltransferase Involved in Mannoprotein Biosynthesis J.Biol.Chem. V. 279 17921 2004.
ISSN: ISSN 0021-9258
PubMed: 14752117
DOI: 10.1074/JBC.M312720200
Page generated: Sat Jul 20 02:03:04 2024

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