Chlorine in PDB 1t60: Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule
Protein crystallography data
The structure of Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule, PDB code: 1t60
was solved by
R.M.Vanacore,
S.Shanmugasundararaj,
D.B.Friedman,
O.Bondar,
B.G.Hudson,
M.Sundaramoorthy,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
8.00 /
1.50
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
127.880,
140.129,
160.692,
90.00,
91.26,
90.00
|
|
R / Rfree (%)
|
18.9 /
21.6
|
Other elements in 1t60:
The structure of Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule also contains other interesting chemical elements:
Chlorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Chlorine atom in the Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule
(pdb code 1t60). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 16 binding sites of Chlorine where determined in the
Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule, PDB code: 1t60:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 16 in 1t60
Go back to
Chlorine Binding Sites List in 1t60
Chlorine binding site 1 out
of 16 in the Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl5201
b:13.5
occ:1.00
|
O
|
A:HOH5203
|
3.0
|
11.1
|
1.0
|
|
O
|
D:HOH5256
|
3.1
|
21.1
|
1.0
|
|
N
|
A:ASP78
|
3.4
|
11.3
|
1.0
|
|
N
|
A:ARG76
|
3.5
|
13.5
|
1.0
|
|
CA
|
A:ALA74
|
3.6
|
11.4
|
1.0
|
|
C
|
A:ARG76
|
3.6
|
13.7
|
1.0
|
|
C
|
A:ALA74
|
3.6
|
12.5
|
1.0
|
|
O
|
A:ARG76
|
3.7
|
13.9
|
1.0
|
|
N
|
A:ASN77
|
3.7
|
12.5
|
1.0
|
|
CA
|
A:GLY178
|
3.8
|
12.6
|
1.0
|
|
N
|
A:SER75
|
3.8
|
11.3
|
1.0
|
|
CB
|
A:ASP78
|
4.1
|
10.3
|
1.0
|
|
CA
|
A:ARG76
|
4.1
|
12.1
|
1.0
|
|
CA
|
A:ASN77
|
4.1
|
11.8
|
1.0
|
|
O
|
A:ALA74
|
4.2
|
11.5
|
1.0
|
|
CA
|
A:ASP78
|
4.2
|
10.7
|
1.0
|
|
C
|
A:ASN77
|
4.2
|
12.7
|
1.0
|
|
CE
|
A:MET60
|
4.4
|
12.8
|
1.0
|
|
N
|
A:ALA74
|
4.4
|
11.2
|
1.0
|
|
N
|
A:GLY178
|
4.4
|
12.2
|
1.0
|
|
C
|
A:SER75
|
4.5
|
14.1
|
1.0
|
|
C
|
A:GLY178
|
4.5
|
13.5
|
1.0
|
|
O
|
A:ASP78
|
4.6
|
10.7
|
1.0
|
|
CB
|
A:ARG76
|
4.6
|
11.2
|
1.0
|
|
O
|
A:HOH5207
|
4.6
|
14.2
|
1.0
|
|
CA
|
A:SER75
|
4.6
|
12.6
|
1.0
|
|
O
|
D:HOH5239
|
4.6
|
15.9
|
1.0
|
|
O
|
A:HOH5202
|
4.7
|
12.3
|
1.0
|
|
CG
|
A:ASP78
|
4.7
|
11.9
|
1.0
|
|
CB
|
A:ALA74
|
4.7
|
12.9
|
1.0
|
|
NH2
|
D:ARG179
|
4.8
|
17.1
|
1.0
|
|
OD1
|
A:ASP78
|
4.8
|
10.8
|
1.0
|
|
C
|
A:ASP78
|
4.8
|
11.2
|
1.0
|
|
CG
|
A:MET60
|
4.8
|
11.3
|
1.0
|
|
SD
|
A:MET60
|
4.9
|
13.6
|
1.0
|
|
O
|
A:GLY178
|
5.0
|
13.5
|
1.0
|
|
Chlorine binding site 2 out
of 16 in 1t60
Go back to
Chlorine Binding Sites List in 1t60
Chlorine binding site 2 out
of 16 in the Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl5202
b:15.1
occ:1.00
|
O
|
C:HOH5209
|
3.0
|
12.3
|
1.0
|
|
O
|
C:HOH5221
|
3.0
|
14.3
|
1.0
|
|
N
|
C:ARG75
|
3.3
|
13.9
|
1.0
|
|
N
|
C:ASP77
|
3.4
|
12.9
|
1.0
|
|
C
|
C:ARG75
|
3.5
|
14.5
|
1.0
|
|
CA
|
C:ALA73
|
3.7
|
13.6
|
1.0
|
|
N
|
C:ASN76
|
3.7
|
12.3
|
1.0
|
|
N
|
C:SER74
|
3.8
|
13.6
|
1.0
|
|
C
|
C:ALA73
|
3.8
|
13.7
|
1.0
|
|
O
|
C:ARG75
|
3.8
|
15.8
|
1.0
|
|
CA
|
C:ARG75
|
3.8
|
13.4
|
1.0
|
|
CB
|
C:ASP77
|
4.0
|
11.4
|
1.0
|
|
O
|
C:HOH5222
|
4.1
|
15.1
|
1.0
|
|
CA
|
C:ASP77
|
4.2
|
12.8
|
1.0
|
|
CB
|
C:ARG75
|
4.3
|
12.2
|
1.0
|
|
CA
|
C:ASN76
|
4.3
|
12.6
|
1.0
|
|
CE
|
C:MET59
|
4.3
|
12.1
|
1.0
|
|
CB
|
C:ALA176
|
4.3
|
14.4
|
1.0
|
|
C
|
C:ASN76
|
4.3
|
12.4
|
1.0
|
|
O
|
C:ASP77
|
4.3
|
13.4
|
1.0
|
|
N
|
C:ALA176
|
4.4
|
15.9
|
1.0
|
|
N
|
C:ALA73
|
4.4
|
13.5
|
1.0
|
|
C
|
C:SER74
|
4.4
|
14.2
|
1.0
|
|
O
|
C:ALA73
|
4.5
|
13.6
|
1.0
|
|
O
|
C:HOH5203
|
4.5
|
12.3
|
1.0
|
|
CA
|
C:SER74
|
4.6
|
13.8
|
1.0
|
|
CG
|
C:ASP77
|
4.6
|
14.1
|
1.0
|
|
C
|
C:ASP77
|
4.7
|
13.0
|
1.0
|
|
CG
|
C:MET59
|
4.7
|
13.5
|
1.0
|
|
OD1
|
C:ASP77
|
4.7
|
13.2
|
1.0
|
|
CB
|
C:ALA73
|
4.8
|
12.3
|
1.0
|
|
SD
|
C:MET59
|
4.9
|
13.2
|
1.0
|
|
CA
|
C:ALA176
|
4.9
|
16.2
|
1.0
|
|
Chlorine binding site 3 out
of 16 in 1t60
Go back to
Chlorine Binding Sites List in 1t60
Chlorine binding site 3 out
of 16 in the Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl5203
b:13.2
occ:1.00
|
O
|
D:HOH5211
|
3.0
|
10.6
|
1.0
|
|
O
|
A:HOH5246
|
3.0
|
21.1
|
1.0
|
|
N
|
D:ASP78
|
3.3
|
11.4
|
1.0
|
|
N
|
D:ARG76
|
3.5
|
14.2
|
1.0
|
|
CA
|
D:ALA74
|
3.6
|
12.0
|
1.0
|
|
C
|
D:ARG76
|
3.6
|
14.0
|
1.0
|
|
C
|
D:ALA74
|
3.6
|
13.0
|
1.0
|
|
N
|
D:ASN77
|
3.7
|
13.6
|
1.0
|
|
CA
|
D:GLY178
|
3.7
|
12.1
|
1.0
|
|
N
|
D:SER75
|
3.8
|
12.2
|
1.0
|
|
O
|
D:ARG76
|
3.9
|
15.6
|
1.0
|
|
CA
|
D:ARG76
|
4.1
|
14.0
|
1.0
|
|
CB
|
D:ASP78
|
4.1
|
11.6
|
1.0
|
|
CA
|
D:ASN77
|
4.1
|
12.6
|
1.0
|
|
CA
|
D:ASP78
|
4.2
|
11.2
|
1.0
|
|
C
|
D:ASN77
|
4.2
|
11.7
|
1.0
|
|
O
|
D:ALA74
|
4.2
|
13.4
|
1.0
|
|
CE
|
D:MET60
|
4.3
|
7.5
|
1.0
|
|
N
|
D:GLY178
|
4.4
|
11.3
|
1.0
|
|
O
|
D:ASP78
|
4.4
|
9.3
|
1.0
|
|
N
|
D:ALA74
|
4.5
|
11.4
|
1.0
|
|
NH2
|
A:ARG179
|
4.5
|
18.9
|
1.0
|
|
C
|
D:GLY178
|
4.5
|
12.2
|
1.0
|
|
C
|
D:SER75
|
4.5
|
14.3
|
1.0
|
|
CB
|
D:ALA74
|
4.6
|
12.2
|
1.0
|
|
CA
|
D:SER75
|
4.6
|
13.6
|
1.0
|
|
CB
|
D:ARG76
|
4.6
|
12.3
|
1.0
|
|
O
|
A:HOH5218
|
4.6
|
17.0
|
1.0
|
|
O
|
D:HOH5204
|
4.6
|
11.3
|
1.0
|
|
CG
|
D:ASP78
|
4.7
|
11.8
|
1.0
|
|
O
|
D:HOH5216
|
4.7
|
9.9
|
1.0
|
|
C
|
D:ASP78
|
4.7
|
10.4
|
1.0
|
|
OD1
|
D:ASP78
|
4.7
|
12.3
|
1.0
|
|
CG
|
D:MET60
|
4.8
|
8.6
|
1.0
|
|
SD
|
D:MET60
|
4.9
|
10.7
|
1.0
|
|
O
|
D:GLY178
|
5.0
|
12.7
|
1.0
|
|
Chlorine binding site 4 out
of 16 in 1t60
Go back to
Chlorine Binding Sites List in 1t60
Chlorine binding site 4 out
of 16 in the Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cl5204
b:14.6
occ:1.00
|
O
|
F:HOH5224
|
3.0
|
15.5
|
1.0
|
|
O
|
F:HOH5225
|
3.1
|
12.2
|
1.0
|
|
N
|
F:ARG75
|
3.3
|
13.8
|
1.0
|
|
N
|
F:ASP77
|
3.5
|
12.0
|
1.0
|
|
CA
|
F:ALA73
|
3.6
|
13.2
|
1.0
|
|
C
|
F:ARG75
|
3.6
|
14.7
|
1.0
|
|
N
|
F:ASN76
|
3.7
|
13.3
|
1.0
|
|
N
|
F:SER74
|
3.7
|
15.3
|
1.0
|
|
C
|
F:ALA73
|
3.8
|
14.2
|
1.0
|
|
CA
|
F:ARG75
|
3.8
|
14.9
|
1.0
|
|
O
|
F:ARG75
|
3.9
|
15.2
|
1.0
|
|
CB
|
F:ASP77
|
4.0
|
11.1
|
1.0
|
|
O
|
F:HOH5230
|
4.2
|
14.1
|
1.0
|
|
CA
|
F:ASP77
|
4.2
|
12.1
|
1.0
|
|
CB
|
F:ARG75
|
4.3
|
13.4
|
1.0
|
|
CE
|
F:MET59
|
4.3
|
11.9
|
1.0
|
|
N
|
F:ALA73
|
4.3
|
12.4
|
1.0
|
|
CA
|
F:ASN76
|
4.3
|
11.8
|
1.0
|
|
CB
|
F:ALA176
|
4.3
|
17.3
|
1.0
|
|
C
|
F:ASN76
|
4.4
|
11.2
|
1.0
|
|
O
|
F:ASP77
|
4.4
|
15.0
|
1.0
|
|
N
|
F:ALA176
|
4.4
|
17.5
|
1.0
|
|
C
|
F:SER74
|
4.4
|
15.4
|
1.0
|
|
O
|
F:HOH5210
|
4.4
|
11.8
|
1.0
|
|
O
|
F:ALA73
|
4.5
|
14.8
|
1.0
|
|
CG
|
F:ASP77
|
4.6
|
14.2
|
1.0
|
|
CA
|
F:SER74
|
4.6
|
15.1
|
1.0
|
|
CB
|
F:ALA73
|
4.7
|
11.5
|
1.0
|
|
C
|
F:ASP77
|
4.7
|
13.6
|
1.0
|
|
OD1
|
F:ASP77
|
4.7
|
13.0
|
1.0
|
|
CG
|
F:MET59
|
4.8
|
11.7
|
1.0
|
|
SD
|
F:MET59
|
4.8
|
10.9
|
1.0
|
|
CA
|
F:ALA176
|
4.9
|
18.0
|
1.0
|
|
Chlorine binding site 5 out
of 16 in 1t60
Go back to
Chlorine Binding Sites List in 1t60
Chlorine binding site 5 out
of 16 in the Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Cl5205
b:14.1
occ:1.00
|
O
|
G:HOH5215
|
3.1
|
13.6
|
1.0
|
|
N
|
G:ASP78
|
3.3
|
11.2
|
1.0
|
|
N
|
G:ARG76
|
3.4
|
16.4
|
1.0
|
|
NH1
|
J:ARG179
|
3.6
|
24.1
|
1.0
|
|
C
|
G:ARG76
|
3.6
|
15.1
|
1.0
|
|
CA
|
G:ALA74
|
3.6
|
14.3
|
1.0
|
|
C
|
G:ALA74
|
3.6
|
15.6
|
1.0
|
|
CA
|
G:GLY178
|
3.7
|
13.2
|
1.0
|
|
O
|
G:ARG76
|
3.7
|
15.5
|
1.0
|
|
N
|
G:ASN77
|
3.7
|
12.8
|
1.0
|
|
N
|
G:SER75
|
3.8
|
14.3
|
1.0
|
|
CB
|
G:ASP78
|
4.0
|
11.4
|
1.0
|
|
CA
|
G:ARG76
|
4.0
|
14.2
|
1.0
|
|
O
|
G:ALA74
|
4.1
|
16.0
|
1.0
|
|
CA
|
G:ASP78
|
4.1
|
11.6
|
1.0
|
|
CA
|
G:ASN77
|
4.1
|
13.1
|
1.0
|
|
C
|
G:ASN77
|
4.2
|
12.2
|
1.0
|
|
O
|
J:HOH5231
|
4.3
|
17.9
|
1.0
|
|
CE
|
G:MET60
|
4.3
|
8.3
|
1.0
|
|
N
|
G:GLY178
|
4.3
|
13.7
|
1.0
|
|
O
|
G:ASP78
|
4.4
|
10.6
|
1.0
|
|
N
|
G:ALA74
|
4.4
|
13.3
|
1.0
|
|
C
|
G:SER75
|
4.5
|
16.9
|
1.0
|
|
C
|
G:GLY178
|
4.5
|
13.8
|
1.0
|
|
CB
|
G:ARG76
|
4.6
|
13.2
|
1.0
|
|
CA
|
G:SER75
|
4.6
|
15.6
|
1.0
|
|
O
|
G:HOH5218
|
4.6
|
16.2
|
1.0
|
|
CG
|
G:ASP78
|
4.6
|
12.6
|
1.0
|
|
CB
|
G:ALA74
|
4.7
|
13.6
|
1.0
|
|
C
|
G:ASP78
|
4.7
|
11.4
|
1.0
|
|
O
|
G:HOH5214
|
4.7
|
13.5
|
1.0
|
|
CZ
|
J:ARG179
|
4.8
|
24.0
|
1.0
|
|
OD1
|
G:ASP78
|
4.8
|
13.4
|
1.0
|
|
CG
|
G:MET60
|
4.8
|
10.4
|
1.0
|
|
SD
|
G:MET60
|
4.9
|
10.3
|
1.0
|
|
Chlorine binding site 6 out
of 16 in 1t60
Go back to
Chlorine Binding Sites List in 1t60
Chlorine binding site 6 out
of 16 in the Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Cl5206
b:11.5
occ:1.00
|
O
|
I:HOH5211
|
3.1
|
10.9
|
1.0
|
|
O
|
I:HOH5212
|
3.1
|
11.4
|
1.0
|
|
N
|
I:ARG75
|
3.3
|
13.7
|
1.0
|
|
N
|
I:ASP77
|
3.3
|
9.8
|
1.0
|
|
C
|
I:ARG75
|
3.5
|
14.1
|
1.0
|
|
CA
|
I:ALA73
|
3.6
|
12.8
|
1.0
|
|
N
|
I:ASN76
|
3.6
|
11.9
|
1.0
|
|
O
|
I:ARG75
|
3.8
|
14.0
|
1.0
|
|
C
|
I:ALA73
|
3.8
|
14.2
|
1.0
|
|
N
|
I:SER74
|
3.8
|
13.7
|
1.0
|
|
CA
|
I:ARG75
|
3.8
|
13.8
|
1.0
|
|
CB
|
I:ASP77
|
4.0
|
8.9
|
1.0
|
|
CA
|
I:ASP77
|
4.1
|
10.2
|
1.0
|
|
CA
|
I:ASN76
|
4.2
|
11.2
|
1.0
|
|
CB
|
I:ARG75
|
4.2
|
12.7
|
1.0
|
|
C
|
I:ASN76
|
4.2
|
9.5
|
1.0
|
|
CE
|
I:MET59
|
4.2
|
11.3
|
1.0
|
|
O
|
I:HOH5229
|
4.3
|
16.4
|
1.0
|
|
CB
|
I:ALA176
|
4.3
|
17.3
|
1.0
|
|
N
|
I:ALA73
|
4.3
|
12.9
|
1.0
|
|
O
|
I:ASP77
|
4.4
|
11.3
|
1.0
|
|
N
|
I:ALA176
|
4.4
|
16.6
|
1.0
|
|
C
|
I:SER74
|
4.4
|
15.0
|
1.0
|
|
O
|
I:ALA73
|
4.5
|
14.0
|
1.0
|
|
O
|
I:HOH5218
|
4.6
|
10.4
|
1.0
|
|
CG
|
I:ASP77
|
4.6
|
9.8
|
1.0
|
|
C
|
I:ASP77
|
4.6
|
10.8
|
1.0
|
|
OD1
|
I:ASP77
|
4.7
|
10.9
|
1.0
|
|
CA
|
I:SER74
|
4.7
|
14.6
|
1.0
|
|
CB
|
I:ALA73
|
4.7
|
12.7
|
1.0
|
|
CG
|
I:MET59
|
4.8
|
11.6
|
1.0
|
|
SD
|
I:MET59
|
4.9
|
11.7
|
1.0
|
|
CA
|
I:ALA176
|
4.9
|
17.6
|
1.0
|
|
Chlorine binding site 7 out
of 16 in 1t60
Go back to
Chlorine Binding Sites List in 1t60
Chlorine binding site 7 out
of 16 in the Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Cl5207
b:13.6
occ:1.00
|
O
|
J:HOH5216
|
3.0
|
12.4
|
1.0
|
|
N
|
J:ASP78
|
3.3
|
11.2
|
1.0
|
|
N
|
J:ARG76
|
3.5
|
13.1
|
1.0
|
|
C
|
J:ARG76
|
3.5
|
13.8
|
1.0
|
|
NH2
|
G:ARG179
|
3.6
|
25.1
|
1.0
|
|
CA
|
J:ALA74
|
3.6
|
11.4
|
1.0
|
|
CA
|
J:GLY178
|
3.6
|
12.2
|
1.0
|
|
C
|
J:ALA74
|
3.7
|
13.1
|
1.0
|
|
O
|
J:ARG76
|
3.7
|
15.1
|
1.0
|
|
N
|
J:ASN77
|
3.7
|
13.4
|
1.0
|
|
N
|
J:SER75
|
3.9
|
12.3
|
1.0
|
|
CA
|
J:ARG76
|
4.0
|
13.3
|
1.0
|
|
CB
|
J:ASP78
|
4.0
|
11.6
|
1.0
|
|
CA
|
J:ASN77
|
4.1
|
13.4
|
1.0
|
|
O
|
J:ALA74
|
4.1
|
13.4
|
1.0
|
|
CA
|
J:ASP78
|
4.1
|
11.5
|
1.0
|
|
C
|
J:ASN77
|
4.2
|
12.4
|
1.0
|
|
CE
|
J:MET60
|
4.3
|
11.8
|
1.0
|
|
N
|
J:GLY178
|
4.3
|
11.6
|
1.0
|
|
O
|
G:HOH5238
|
4.4
|
15.2
|
1.0
|
|
O
|
J:ASP78
|
4.4
|
11.6
|
1.0
|
|
C
|
J:GLY178
|
4.5
|
12.6
|
1.0
|
|
N
|
J:ALA74
|
4.5
|
11.7
|
1.0
|
|
C
|
J:SER75
|
4.5
|
14.6
|
1.0
|
|
CB
|
J:ARG76
|
4.6
|
11.7
|
1.0
|
|
O
|
J:HOH5217
|
4.6
|
12.2
|
1.0
|
|
CG
|
J:ASP78
|
4.7
|
13.6
|
1.0
|
|
CA
|
J:SER75
|
4.7
|
12.6
|
1.0
|
|
C
|
J:ASP78
|
4.7
|
11.2
|
1.0
|
|
CB
|
J:ALA74
|
4.7
|
11.3
|
1.0
|
|
O
|
J:HOH5211
|
4.7
|
9.4
|
1.0
|
|
OD1
|
J:ASP78
|
4.8
|
14.9
|
1.0
|
|
CZ
|
G:ARG179
|
4.8
|
21.6
|
1.0
|
|
CG
|
J:MET60
|
4.9
|
11.8
|
1.0
|
|
SD
|
J:MET60
|
4.9
|
12.0
|
1.0
|
|
O
|
J:GLY178
|
5.0
|
12.7
|
1.0
|
|
Chlorine binding site 8 out
of 16 in 1t60
Go back to
Chlorine Binding Sites List in 1t60
Chlorine binding site 8 out
of 16 in the Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Cl5209
b:15.8
occ:1.00
|
O
|
L:HOH5216
|
3.0
|
13.9
|
1.0
|
|
O
|
L:HOH5229
|
3.0
|
16.1
|
1.0
|
|
N
|
L:ARG75
|
3.2
|
15.4
|
1.0
|
|
N
|
L:ASP77
|
3.4
|
12.1
|
1.0
|
|
C
|
L:ARG75
|
3.5
|
14.3
|
1.0
|
|
CA
|
L:ALA73
|
3.6
|
15.8
|
1.0
|
|
N
|
L:ASN76
|
3.6
|
13.4
|
1.0
|
|
CA
|
L:ARG75
|
3.7
|
14.8
|
1.0
|
|
C
|
L:ALA73
|
3.8
|
16.9
|
1.0
|
|
N
|
L:SER74
|
3.8
|
16.6
|
1.0
|
|
O
|
L:ARG75
|
3.8
|
15.2
|
1.0
|
|
CB
|
L:ASP77
|
4.0
|
11.6
|
1.0
|
|
NH1
|
H:ARG179
|
4.1
|
45.8
|
1.0
|
|
CB
|
L:ARG75
|
4.1
|
13.0
|
1.0
|
|
CA
|
L:ASP77
|
4.2
|
12.7
|
1.0
|
|
CA
|
L:ASN76
|
4.3
|
12.7
|
1.0
|
|
O
|
L:HOH5220
|
4.3
|
19.6
|
1.0
|
|
CB
|
L:ALA176
|
4.3
|
17.6
|
1.0
|
|
C
|
L:ASN76
|
4.3
|
12.2
|
1.0
|
|
N
|
L:ALA73
|
4.3
|
15.3
|
1.0
|
|
C
|
L:SER74
|
4.4
|
16.3
|
1.0
|
|
O
|
L:ASP77
|
4.4
|
13.2
|
1.0
|
|
N
|
L:ALA176
|
4.4
|
20.1
|
1.0
|
|
O
|
L:ALA73
|
4.4
|
18.2
|
1.0
|
|
O
|
L:HOH5218
|
4.4
|
12.4
|
1.0
|
|
CE
|
L:MET59
|
4.5
|
11.7
|
1.0
|
|
CG
|
L:ASP77
|
4.6
|
12.9
|
1.0
|
|
CA
|
L:SER74
|
4.6
|
16.2
|
1.0
|
|
C
|
L:ASP77
|
4.6
|
13.9
|
1.0
|
|
CG
|
L:MET59
|
4.7
|
16.4
|
1.0
|
|
CB
|
L:ALA73
|
4.7
|
14.6
|
1.0
|
|
OD1
|
L:ASP77
|
4.7
|
11.9
|
1.0
|
|
SD
|
L:MET59
|
4.9
|
16.1
|
1.0
|
|
CA
|
L:ALA176
|
4.9
|
19.9
|
1.0
|
|
Chlorine binding site 9 out
of 16 in 1t60
Go back to
Chlorine Binding Sites List in 1t60
Chlorine binding site 9 out
of 16 in the Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Cl5208
b:15.9
occ:1.00
|
O
|
M:HOH5217
|
3.0
|
12.6
|
1.0
|
|
O
|
P:HOH5251
|
3.0
|
24.4
|
1.0
|
|
N
|
M:ASP78
|
3.4
|
13.3
|
1.0
|
|
N
|
M:ARG76
|
3.4
|
17.4
|
1.0
|
|
CA
|
M:ALA74
|
3.5
|
14.6
|
1.0
|
|
C
|
M:ARG76
|
3.6
|
15.8
|
1.0
|
|
C
|
M:ALA74
|
3.6
|
15.9
|
1.0
|
|
CA
|
M:GLY178
|
3.7
|
15.9
|
1.0
|
|
N
|
M:ASN77
|
3.7
|
14.1
|
1.0
|
|
O
|
M:ARG76
|
3.8
|
16.1
|
1.0
|
|
N
|
M:SER75
|
3.8
|
16.8
|
1.0
|
|
CA
|
M:ARG76
|
4.0
|
16.6
|
1.0
|
|
CB
|
M:ASP78
|
4.1
|
14.0
|
1.0
|
|
O
|
M:ALA74
|
4.1
|
15.7
|
1.0
|
|
CA
|
M:ASN77
|
4.1
|
13.7
|
1.0
|
|
CE
|
M:MET60
|
4.2
|
14.4
|
1.0
|
|
CA
|
M:ASP78
|
4.2
|
13.7
|
1.0
|
|
C
|
M:ASN77
|
4.3
|
15.1
|
1.0
|
|
N
|
M:GLY178
|
4.3
|
14.7
|
1.0
|
|
N
|
M:ALA74
|
4.4
|
14.6
|
1.0
|
|
O
|
M:ASP78
|
4.4
|
13.6
|
1.0
|
|
C
|
M:SER75
|
4.5
|
17.9
|
1.0
|
|
C
|
M:GLY178
|
4.5
|
16.4
|
1.0
|
|
O
|
P:HOH5227
|
4.6
|
18.5
|
1.0
|
|
O
|
M:HOH5214
|
4.6
|
16.2
|
1.0
|
|
CB
|
M:ALA74
|
4.6
|
14.7
|
1.0
|
|
CB
|
M:ARG76
|
4.6
|
15.0
|
1.0
|
|
O
|
M:HOH5210
|
4.6
|
13.9
|
1.0
|
|
CA
|
M:SER75
|
4.6
|
17.1
|
1.0
|
|
CG
|
M:ASP78
|
4.7
|
17.5
|
1.0
|
|
NH2
|
P:ARG179
|
4.7
|
23.3
|
1.0
|
|
C
|
M:ASP78
|
4.7
|
13.0
|
1.0
|
|
OD1
|
M:ASP78
|
4.7
|
17.6
|
1.0
|
|
CG
|
M:MET60
|
4.8
|
14.6
|
1.0
|
|
SD
|
M:MET60
|
4.9
|
14.2
|
1.0
|
|
O
|
M:GLY178
|
5.0
|
17.1
|
1.0
|
|
Chlorine binding site 10 out
of 16 in 1t60
Go back to
Chlorine Binding Sites List in 1t60
Chlorine binding site 10 out
of 16 in the Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Cl5210
b:13.2
occ:1.00
|
O
|
O:HOH5232
|
3.0
|
15.1
|
1.0
|
|
O
|
O:HOH5213
|
3.1
|
14.1
|
1.0
|
|
N
|
O:ARG75
|
3.2
|
12.8
|
1.0
|
|
N
|
O:ASP77
|
3.4
|
12.8
|
1.0
|
|
C
|
O:ARG75
|
3.5
|
12.9
|
1.0
|
|
CA
|
O:ALA73
|
3.6
|
12.8
|
1.0
|
|
N
|
O:ASN76
|
3.7
|
12.8
|
1.0
|
|
N
|
O:SER74
|
3.7
|
12.6
|
1.0
|
|
C
|
O:ALA73
|
3.7
|
13.5
|
1.0
|
|
O
|
O:ARG75
|
3.7
|
15.0
|
1.0
|
|
CA
|
O:ARG75
|
3.8
|
13.0
|
1.0
|
|
CB
|
O:ASP77
|
4.1
|
12.7
|
1.0
|
|
O
|
O:HOH5218
|
4.1
|
12.8
|
1.0
|
|
CA
|
O:ASP77
|
4.2
|
11.8
|
1.0
|
|
CB
|
O:ALA176
|
4.2
|
13.9
|
1.0
|
|
CB
|
O:ARG75
|
4.3
|
11.3
|
1.0
|
|
CA
|
O:ASN76
|
4.3
|
13.0
|
1.0
|
|
C
|
O:ASN76
|
4.3
|
13.6
|
1.0
|
|
C
|
O:SER74
|
4.3
|
13.6
|
1.0
|
|
CE
|
O:MET59
|
4.3
|
12.2
|
1.0
|
|
N
|
O:ALA73
|
4.3
|
13.7
|
1.0
|
|
N
|
O:ALA176
|
4.3
|
13.4
|
1.0
|
|
O
|
O:ASP77
|
4.3
|
11.9
|
1.0
|
|
O
|
O:ALA73
|
4.3
|
14.4
|
1.0
|
|
O
|
O:HOH5228
|
4.5
|
13.5
|
1.0
|
|
CA
|
O:SER74
|
4.5
|
13.1
|
1.0
|
|
C
|
O:ASP77
|
4.6
|
12.0
|
1.0
|
|
CG
|
O:ASP77
|
4.7
|
13.0
|
1.0
|
|
CB
|
O:ALA73
|
4.7
|
12.0
|
1.0
|
|
OD1
|
O:ASP77
|
4.7
|
12.3
|
1.0
|
|
CG
|
O:MET59
|
4.7
|
14.6
|
1.0
|
|
CA
|
O:ALA176
|
4.8
|
14.7
|
1.0
|
|
SD
|
O:MET59
|
4.9
|
13.6
|
1.0
|
|
Reference:
R.M.Vanacore,
S.Shanmugasundararaj,
D.B.Friedman,
O.Bondar,
B.G.Hudson,
M.Sundaramoorthy.
The ALPHA1.ALPHA2 Network of Collagen IV. Reinforced Stabilization of the Noncollagenous Domain-1 By Noncovalent Forces and the Absence of Met-Lys Cross-Links J.Biol.Chem. V. 279 44723 2004.
ISSN: ISSN 0021-9258
PubMed: 15299013
DOI: 10.1074/JBC.M406344200
Page generated: Sat Dec 12 08:49:43 2020
|
