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Chlorine in PDB 1t6c: Structural Characterization of the Ppx/Gppa Protein Family: Crystal Structure of the Aquifex Aeolicus Family Member

Enzymatic activity of Structural Characterization of the Ppx/Gppa Protein Family: Crystal Structure of the Aquifex Aeolicus Family Member

All present enzymatic activity of Structural Characterization of the Ppx/Gppa Protein Family: Crystal Structure of the Aquifex Aeolicus Family Member:
3.6.1.11; 3.6.1.40;

Protein crystallography data

The structure of Structural Characterization of the Ppx/Gppa Protein Family: Crystal Structure of the Aquifex Aeolicus Family Member, PDB code: 1t6c was solved by O.Kristensen, M.Laurberg, A.Liljas, J.S.Kastrup, M.Gajhede, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.53
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 50.776, 70.287, 90.783, 90.00, 90.00, 90.00
R / Rfree (%) 16.2 / 21.7

Other elements in 1t6c:

The structure of Structural Characterization of the Ppx/Gppa Protein Family: Crystal Structure of the Aquifex Aeolicus Family Member also contains other interesting chemical elements:

Iodine (I) 1 atom
Calcium (Ca) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structural Characterization of the Ppx/Gppa Protein Family: Crystal Structure of the Aquifex Aeolicus Family Member (pdb code 1t6c). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Structural Characterization of the Ppx/Gppa Protein Family: Crystal Structure of the Aquifex Aeolicus Family Member, PDB code: 1t6c:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 1t6c

Go back to Chlorine Binding Sites List in 1t6c
Chlorine binding site 1 out of 3 in the Structural Characterization of the Ppx/Gppa Protein Family: Crystal Structure of the Aquifex Aeolicus Family Member


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structural Characterization of the Ppx/Gppa Protein Family: Crystal Structure of the Aquifex Aeolicus Family Member within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl503

b:10.5
occ:1.00
 O A:HOH620 3.2 13.5 1.0
NE2 A:GLN142 3.3 14.2 1.0
N A:GLY145 3.3 12.1 1.0
O A:HOH624 3.3 15.6 1.0
N A:ILE167 3.3 11.5 1.0
C A:GLY143 3.6 10.9 1.0
CA A:GLY166 3.6 12.1 1.0
CA A:GLY143 3.6 11.2 1.0
N A:GLY143 3.7 10.7 1.0
N A:GLY144 3.7 11.8 1.0
N A:SER146 3.7 11.8 1.0
CA A:GLY145 3.7 12.8 1.0
CG1 A:ILE167 3.8 11.6 1.0
C A:GLY145 4.0 11.7 1.0
C A:GLY166 4.0 11.7 1.0
O A:SER146 4.1 11.1 1.0
O A:GLY143 4.1 12.0 1.0
O A:HOH995 4.2 25.3 1.0
CG2 A:ILE167 4.2 10.9 1.0
CD A:GLN142 4.3 14.6 1.0
CG A:GLN142 4.3 12.9 1.0
CB A:ILE167 4.4 10.9 1.0
C A:GLY144 4.4 12.4 1.0
CA A:ILE167 4.4 10.6 1.0
O A:HOH984 4.5 35.3 1.0
CA A:GLY144 4.6 12.8 1.0
C A:SER146 4.6 10.6 1.0
CA A:SER146 4.6 11.2 1.0
CD1 A:ILE167 4.7 12.6 1.0
C A:GLN142 4.7 11.5 1.0
N A:GLY166 4.7 12.0 1.0
O A:ILE165 4.8 13.5 1.0
O A:GLY145 4.9 11.9 1.0

Chlorine binding site 2 out of 3 in 1t6c

Go back to Chlorine Binding Sites List in 1t6c
Chlorine binding site 2 out of 3 in the Structural Characterization of the Ppx/Gppa Protein Family: Crystal Structure of the Aquifex Aeolicus Family Member


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structural Characterization of the Ppx/Gppa Protein Family: Crystal Structure of the Aquifex Aeolicus Family Member within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl504

b:26.8
occ:1.00
 O A:HOH972 2.7 37.5 1.0
O A:HOH624 3.1 15.6 1.0
O A:HOH953 3.2 43.4 1.0
N A:ASN169 3.3 10.2 1.0
O A:HOH910 3.5 37.4 1.0
CA A:GLY166 3.6 12.1 1.0
CB A:ASN169 3.6 12.1 1.0
C A:GLY166 3.7 11.7 1.0
CB A:VAL168 3.7 11.0 1.0
O A:GLY166 3.8 12.6 1.0
N A:VAL168 3.8 10.1 1.0
CA A:ASN169 4.1 11.1 1.0
CA A:GLY145 4.1 12.8 1.0
CA A:VAL168 4.1 10.3 1.0
C A:VAL168 4.2 11.4 1.0
N A:ILE167 4.3 11.5 1.0
O A:HOH926 4.3 39.2 1.0
N A:GLY166 4.4 12.0 1.0
O A:HOH994 4.4 45.2 1.0
CG1 A:VAL168 4.5 13.5 1.0
CG2 A:VAL168 4.6 11.5 1.0
C A:ILE167 4.8 10.6 1.0
O A:GLY145 4.8 11.9 1.0
C A:GLY145 4.9 11.7 1.0
N A:GLY145 5.0 12.1 1.0
CG A:ASN169 5.0 14.0 1.0

Chlorine binding site 3 out of 3 in 1t6c

Go back to Chlorine Binding Sites List in 1t6c
Chlorine binding site 3 out of 3 in the Structural Characterization of the Ppx/Gppa Protein Family: Crystal Structure of the Aquifex Aeolicus Family Member


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structural Characterization of the Ppx/Gppa Protein Family: Crystal Structure of the Aquifex Aeolicus Family Member within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl505

b:27.7
occ:1.00
 O A:HOH628 3.2 17.6 1.0
O A:HOH630 3.4 18.4 1.0
CD A:ARG267 3.4 34.0 1.0
O A:HOH984 3.5 35.3 1.0
NE2 A:GLN142 3.6 14.2 1.0
O A:HOH979 3.8 42.8 1.0
CD1 A:ILE167 4.0 12.6 1.0
NE A:ARG267 4.0 37.5 1.0
OG1 A:THR212 4.1 13.2 1.0
N A:THR212 4.2 10.8 1.0
O A:HOH995 4.2 25.3 1.0
OE1 A:GLN142 4.2 13.9 1.0
CA A:GLY211 4.2 10.9 1.0
N A:GLY211 4.3 10.9 1.0
CD A:GLN142 4.3 14.6 1.0
O A:HOH993 4.4 41.8 1.0
C A:GLY211 4.5 11.0 1.0
O A:HOH821 4.5 39.0 1.0
CZ A:ARG267 4.6 40.1 1.0
NH1 A:ARG267 4.7 41.1 1.0
CG A:ARG267 4.7 26.5 1.0
CA A:GLY143 5.0 11.2 1.0

Reference:

O.Kristensen, M.Laurberg, A.Liljas, J.S.Kastrup, M.Gajhede. Structural Characterization of the Stringent Response Related Exopolyphosphatase/Guanosine Pentaphosphate Phosphohydrolase Protein Family Biochemistry V. 43 8894 2004.
ISSN: ISSN 0006-2960
PubMed: 15248747
DOI: 10.1021/BI049083C
Page generated: Sat Dec 12 08:49:41 2020

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