Atomistry » Chlorine » PDB 1swy-1tgg » 1t6h
Atomistry »
  Chlorine »
    PDB 1swy-1tgg »
      1t6h »

Chlorine in PDB 1t6h: Crystal Structure T4 Lysozyme Incorporating An Unnatural Amino Acid P- Iodo-L-Phenylalanine at Position 153

Enzymatic activity of Crystal Structure T4 Lysozyme Incorporating An Unnatural Amino Acid P- Iodo-L-Phenylalanine at Position 153

All present enzymatic activity of Crystal Structure T4 Lysozyme Incorporating An Unnatural Amino Acid P- Iodo-L-Phenylalanine at Position 153:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure T4 Lysozyme Incorporating An Unnatural Amino Acid P- Iodo-L-Phenylalanine at Position 153, PDB code: 1t6h was solved by G.Spraggon, J.Xie, L.Wang, N.Wu, A.Brock, P.G.Schultz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 84.51 / 2.01
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 59.668, 59.668, 97.574, 90.00, 90.00, 120.00
R / Rfree (%) 15.7 / 21

Other elements in 1t6h:

The structure of Crystal Structure T4 Lysozyme Incorporating An Unnatural Amino Acid P- Iodo-L-Phenylalanine at Position 153 also contains other interesting chemical elements:

Iodine (I) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure T4 Lysozyme Incorporating An Unnatural Amino Acid P- Iodo-L-Phenylalanine at Position 153 (pdb code 1t6h). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure T4 Lysozyme Incorporating An Unnatural Amino Acid P- Iodo-L-Phenylalanine at Position 153, PDB code: 1t6h:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 1t6h

Go back to Chlorine Binding Sites List in 1t6h
Chlorine binding site 1 out of 3 in the Crystal Structure T4 Lysozyme Incorporating An Unnatural Amino Acid P- Iodo-L-Phenylalanine at Position 153


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure T4 Lysozyme Incorporating An Unnatural Amino Acid P- Iodo-L-Phenylalanine at Position 153 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl191

b:18.6
occ:1.00
O A:HOH257 3.0 22.7 1.0
N A:ARG145 3.2 13.0 1.0
N A:ASN144 3.4 12.4 1.0
C A:THR142 3.5 13.5 1.0
CA A:THR142 3.5 12.3 1.0
CB A:THR142 3.6 13.0 1.0
CB A:ASN144 3.7 14.1 1.0
O A:THR142 3.8 12.9 1.0
N A:PRO143 3.8 13.7 1.0
CA A:ASN144 3.8 14.2 1.0
CB A:ARG145 3.9 14.7 1.0
C A:ASN144 4.0 13.9 1.0
CA A:ARG145 4.2 14.0 1.0
CG2 A:THR142 4.2 11.5 1.0
CD A:PRO143 4.2 13.6 1.0
C A:PRO143 4.3 13.8 1.0
CA A:PRO143 4.6 13.6 1.0
CG A:ASN144 4.7 20.0 1.0
O A:HOH228 4.7 22.1 1.0
N A:THR142 4.9 12.7 1.0
OG1 A:THR142 4.9 12.2 1.0
CG A:PRO143 4.9 13.2 1.0
OD1 A:ASN144 4.9 31.0 1.0

Chlorine binding site 2 out of 3 in 1t6h

Go back to Chlorine Binding Sites List in 1t6h
Chlorine binding site 2 out of 3 in the Crystal Structure T4 Lysozyme Incorporating An Unnatural Amino Acid P- Iodo-L-Phenylalanine at Position 153


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure T4 Lysozyme Incorporating An Unnatural Amino Acid P- Iodo-L-Phenylalanine at Position 153 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl192

b:27.7
occ:1.00
O A:HOH251 3.2 19.6 1.0
O A:HOH375 3.2 31.6 1.0
O A:HOH213 3.3 15.1 1.0
O A:HOH299 3.5 24.5 1.0
CE1 A:HIS31 3.6 14.4 1.0
NE2 A:HIS31 3.9 14.6 1.0
CB A:ALA49 4.1 16.9 1.0
O A:HOH350 4.4 35.3 1.0
NE2 A:GLN69 4.5 9.7 1.0
CA A:ALA49 4.5 16.2 1.0
CD2 A:LEU66 4.7 16.9 1.0
ND1 A:HIS31 4.8 11.8 1.0

Chlorine binding site 3 out of 3 in 1t6h

Go back to Chlorine Binding Sites List in 1t6h
Chlorine binding site 3 out of 3 in the Crystal Structure T4 Lysozyme Incorporating An Unnatural Amino Acid P- Iodo-L-Phenylalanine at Position 153


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure T4 Lysozyme Incorporating An Unnatural Amino Acid P- Iodo-L-Phenylalanine at Position 153 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl193

b:14.9
occ:1.00
O A:HOH235 2.4 29.2 1.0
O A:GLY30 2.7 13.5 1.0
O A:PHE104 2.8 14.4 1.0
O A:HOH245 2.9 21.0 1.0
O A:HOH254 3.0 31.5 1.0
O A:HOH237 3.2 22.2 1.0
CE1 A:PHE104 3.2 16.6 1.0
CD1 A:PHE104 3.4 15.7 1.0
C A:PHE104 3.8 14.1 1.0
CZ A:PHE104 3.9 16.5 1.0
C A:GLY30 3.9 12.8 1.0
CG A:PHE104 4.1 13.1 1.0
CE2 A:PHE104 4.5 15.2 1.0
CD2 A:PHE104 4.6 13.8 1.0
N A:LEU32 4.6 14.7 1.0
O A:HOH302 4.6 29.4 1.0
CA A:PHE104 4.6 12.9 1.0
N A:GLN105 4.7 13.5 1.0
CA A:GLY30 4.7 12.3 1.0
O A:HOH269 4.7 22.7 1.0
CA A:GLN105 4.8 14.3 1.0
OE1 A:GLU11 4.8 16.0 1.0
N A:HIS31 4.9 12.0 1.0
CA A:HIS31 4.9 12.8 1.0
CB A:PHE104 4.9 12.1 1.0

Reference:

J.Xie, L.Wang, N.Wu, A.Brock, G.Spraggon, P.G.Schultz. The Site-Specific Incorporation of P-Iodo-L-Phenylalanine Into Proteins For Structure Determination. Nat.Biotechnol. V. 22 1297 2004.
ISSN: ISSN 1087-0156
PubMed: 15378068
DOI: 10.1038/NBT1013
Page generated: Sat Jul 20 02:25:20 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy