Chlorine in PDB 1tjj: Human GM2 Activator Protein Paf Complex

The structure of Human GM2 Activator Protein Paf Complex, PDB code: 1tjj was solved by C.S.Wright, L.-Z.Mi, F.Rastinejad, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.79 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	63.470, 86.510, 120.470, 90.00, 90.00, 90.00
R / Rfree (%)	18.9 / 23.4

The binding sites of Chlorine atom in the Human GM2 Activator Protein Paf Complex (pdb code 1tjj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Human GM2 Activator Protein Paf Complex, PDB code: 1tjj:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Human GM2 Activator Protein Paf Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Human GM2 Activator Protein Paf Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl801 b:17.8 occ:1.00 O C:HOH3389 3.0 39.4 1.0 N A:LEU51 3.2 14.7 1.0 CB A:CYS83 3.2 19.8 1.0 N A:CYS83 3.3 12.3 1.0 CA A:HIS81 3.4 15.6 1.0 CB A:SER49 3.4 21.6 1.0 CB A:HIS81 3.5 15.4 1.0 C A:HIS81 3.5 18.2 1.0 CA A:PRO50 3.6 18.1 1.0 SG A:CYS83 3.6 21.1 1.0 CA A:SER49 3.7 20.6 1.0 CA A:CYS83 3.8 14.8 1.0 N A:PHE82 3.8 19.6 1.0 ND1 A:HIS81 3.8 17.1 1.0 C A:PRO50 3.9 19.2 1.0 N A:ASP84 4.0 17.1 1.0 O A:HIS81 4.0 14.3 1.0 CG A:HIS81 4.1 14.7 1.0 O A:LEU51 4.1 17.3 1.0 CA A:LEU51 4.2 18.3 1.0 CB A:LEU51 4.4 19.9 1.0 C A:CYS83 4.4 19.1 1.0 C A:PHE82 4.4 15.0 1.0 CB A:PRO50 4.5 23.2 1.0 C A:LEU51 4.6 19.5 1.0 N A:PRO50 4.6 18.8 1.0 CA A:PHE82 4.7 17.9 1.0 N A:SER49 4.7 16.9 1.0 C A:SER49 4.7 16.7 1.0 OG A:SER49 4.8 29.6 1.0 O C:HOH3413 4.8 37.9 1.0 N A:HIS81 4.8 13.2 1.0

Chlorine binding site 2 out of 3 in the Human GM2 Activator Protein Paf Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Human GM2 Activator Protein Paf Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl802 b:20.6 occ:1.00 O A:HOH3456 2.9 31.9 1.0 N B:LEU51 3.2 17.2 1.0 CB B:CYS83 3.3 15.5 1.0 N B:CYS83 3.4 11.4 1.0 CA B:HIS81 3.4 15.3 1.0 C B:HIS81 3.5 14.8 1.0 CB B:HIS81 3.6 15.1 1.0 CB B:SER49 3.6 26.3 1.0 CA B:PRO50 3.6 20.9 1.0 SG B:CYS83 3.6 21.7 1.0 ND1 B:HIS81 3.7 19.3 1.0 N B:PHE82 3.8 16.2 1.0 CA B:SER49 3.8 23.7 1.0 CA B:CYS83 3.9 15.1 1.0 C B:PRO50 3.9 20.1 1.0 O B:HIS81 4.0 13.7 1.0 O B:LEU51 4.0 18.4 1.0 N B:ASP84 4.1 15.2 1.0 CG B:HIS81 4.1 14.0 1.0 CA B:LEU51 4.2 17.0 1.0 CB B:LEU51 4.3 17.4 1.0 C B:PHE82 4.4 14.2 1.0 C B:CYS83 4.5 14.4 1.0 CB B:PRO50 4.5 20.9 1.0 C B:LEU51 4.5 16.2 1.0 N B:PRO50 4.6 22.7 1.0 CA B:PHE82 4.7 15.2 1.0 N B:HIS81 4.7 11.7 1.0 N B:SER49 4.8 19.8 1.0 O B:GLU80 4.8 16.6 1.0 C B:SER49 4.8 24.3 1.0 O A:HOH3397 4.9 37.0 1.0 CE1 B:HIS81 4.9 17.1 1.0 OG B:SER49 5.0 29.7 1.0

Chlorine binding site 3 out of 3 in the Human GM2 Activator Protein Paf Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Human GM2 Activator Protein Paf Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl803 b:26.9 occ:1.00 N C:CYS83 3.3 18.2 1.0 N C:LEU51 3.3 22.3 1.0 O C:HOH3420 3.3 34.0 1.0 CB C:CYS83 3.3 21.6 1.0 CA C:HIS81 3.4 20.5 1.0 C C:HIS81 3.5 20.0 1.0 SG C:CYS83 3.6 24.9 1.0 N C:PHE82 3.7 20.3 1.0 CA C:PRO50 3.8 25.8 1.0 CB C:SER49 3.8 30.9 1.0 CA C:CYS83 3.8 21.6 1.0 CA C:SER49 4.0 32.3 1.0 N C:ASP84 4.0 20.2 1.0 C C:PRO50 4.0 23.4 1.0 CB C:HIS81 4.0 20.2 1.0 O C:HIS81 4.1 16.2 1.0 O C:LEU51 4.1 24.1 1.0 CA C:LEU51 4.3 24.1 1.0 C C:PHE82 4.3 19.7 1.0 O C:GLU80 4.4 23.5 1.0 C C:CYS83 4.4 24.0 1.0 CB C:LEU51 4.4 25.2 1.0 CA C:PHE82 4.6 21.3 1.0 CB C:PRO50 4.6 27.1 1.0 C C:LEU51 4.6 21.4 1.0 N C:HIS81 4.7 18.2 1.0 OD1 C:ASP84 4.7 23.2 1.0 N C:PRO50 4.8 28.7 1.0 CG C:ASP84 4.9 27.6 1.0 ND1 C:HIS81 4.9 28.2 1.0 C C:SER49 4.9 30.8 1.0 N C:SER49 4.9 26.4 1.0 C C:GLU80 5.0 18.9 1.0 CG C:HIS81 5.0 23.6 1.0

C.S.Wright, L.-Z.Mi, F.Rastinejad. Evidence For Lipid Packaging in the Crystal Structure of the GM2-Activator Complex with Platelet Activating Factor J.Mol.Biol. V. 342 585 2004.
ISSN: ISSN 0022-2836
PubMed: 15327957
DOI: 10.1016/J.JMB.2004.07.063