Atomistry » Chlorine » PDB 1tgx-1u30 » 1tnz
Atomistry »
  Chlorine »
    PDB 1tgx-1u30 »
      1tnz »

Chlorine in PDB 1tnz: Rat Protein Geranylgeranyltransferase Type-I Complexed with A Ggpp Analog and A Rrcvll Peptide Derived From CDC42 Splice Isoform-2

Enzymatic activity of Rat Protein Geranylgeranyltransferase Type-I Complexed with A Ggpp Analog and A Rrcvll Peptide Derived From CDC42 Splice Isoform-2

All present enzymatic activity of Rat Protein Geranylgeranyltransferase Type-I Complexed with A Ggpp Analog and A Rrcvll Peptide Derived From CDC42 Splice Isoform-2:
2.5.1.59;

Protein crystallography data

The structure of Rat Protein Geranylgeranyltransferase Type-I Complexed with A Ggpp Analog and A Rrcvll Peptide Derived From CDC42 Splice Isoform-2, PDB code: 1tnz was solved by T.S.Reid, K.L.Terry, P.J.Casey, L.S.Beese, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.96 / 2.90
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 271.262, 266.922, 185.750, 90.00, 131.91, 90.00
R / Rfree (%) 19.9 / 21.8

Other elements in 1tnz:

The structure of Rat Protein Geranylgeranyltransferase Type-I Complexed with A Ggpp Analog and A Rrcvll Peptide Derived From CDC42 Splice Isoform-2 also contains other interesting chemical elements:

Zinc (Zn) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Rat Protein Geranylgeranyltransferase Type-I Complexed with A Ggpp Analog and A Rrcvll Peptide Derived From CDC42 Splice Isoform-2 (pdb code 1tnz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Rat Protein Geranylgeranyltransferase Type-I Complexed with A Ggpp Analog and A Rrcvll Peptide Derived From CDC42 Splice Isoform-2, PDB code: 1tnz:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 1tnz

Go back to Chlorine Binding Sites List in 1tnz
Chlorine binding site 1 out of 3 in the Rat Protein Geranylgeranyltransferase Type-I Complexed with A Ggpp Analog and A Rrcvll Peptide Derived From CDC42 Splice Isoform-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Rat Protein Geranylgeranyltransferase Type-I Complexed with A Ggpp Analog and A Rrcvll Peptide Derived From CDC42 Splice Isoform-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl379

b:74.6
occ:1.00
N D:PHE286 3.1 65.5 1.0
N D:GLN287 3.2 64.2 1.0
C D:LYS284 3.4 67.7 1.0
N D:ILE285 3.5 65.1 1.0
CG D:GLN287 3.6 68.8 1.0
CB D:GLN287 3.7 64.8 1.0
O D:LYS284 3.8 68.8 1.0
CA D:LYS284 3.8 69.1 1.0
CB D:PHE286 3.8 60.7 1.0
CA D:PHE286 3.8 63.9 1.0
C D:ILE285 3.8 65.3 1.0
NE2 D:GLN287 3.8 70.9 1.0
CA D:ILE285 3.9 64.4 1.0
C D:PHE286 4.0 64.1 1.0
CA D:GLN287 4.0 65.9 1.0
CD D:GLN287 4.2 72.0 1.0
CD D:LYS281 4.3 70.8 1.0
CA D:LYS281 4.5 66.4 1.0
O D:LYS281 4.5 64.1 1.0
O D:LEU280 4.6 68.4 1.0
N D:LYS284 4.7 69.9 1.0
CE D:LYS281 4.8 74.9 1.0
O D:ILE285 4.8 65.9 1.0
CB D:LYS284 4.8 70.2 1.0
C D:LYS281 5.0 64.2 1.0

Chlorine binding site 2 out of 3 in 1tnz

Go back to Chlorine Binding Sites List in 1tnz
Chlorine binding site 2 out of 3 in the Rat Protein Geranylgeranyltransferase Type-I Complexed with A Ggpp Analog and A Rrcvll Peptide Derived From CDC42 Splice Isoform-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Rat Protein Geranylgeranyltransferase Type-I Complexed with A Ggpp Analog and A Rrcvll Peptide Derived From CDC42 Splice Isoform-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl379

b:72.9
occ:1.00
N F:GLN287 3.4 61.7 1.0
N F:PHE286 3.4 62.1 1.0
C F:LYS284 3.6 62.8 1.0
N F:ILE285 3.7 62.1 1.0
NE2 F:GLN287 3.8 63.1 1.0
CB F:GLN287 3.8 62.9 1.0
CA F:LYS284 3.9 63.2 1.0
CG F:GLN287 3.9 64.4 1.0
O F:LYS284 3.9 63.2 1.0
CB F:PHE286 4.0 62.3 1.0
CA F:PHE286 4.0 62.1 1.0
C F:ILE285 4.1 62.1 1.0
CA F:GLN287 4.2 62.8 1.0
CD F:GLN287 4.2 66.0 1.0
C F:PHE286 4.2 61.4 1.0
CA F:ILE285 4.2 61.5 1.0
CD F:LYS281 4.3 67.9 1.0
O F:LYS281 4.5 63.0 1.0
CA F:LYS281 4.5 62.7 1.0
CE F:LYS281 4.6 69.5 1.0
O F:LEU280 4.8 64.1 1.0
N F:LYS284 4.8 63.2 1.0
CB F:LYS284 4.8 65.3 1.0
CG F:LYS281 5.0 64.4 1.0
NZ F:LYS281 5.0 71.5 1.0

Chlorine binding site 3 out of 3 in 1tnz

Go back to Chlorine Binding Sites List in 1tnz
Chlorine binding site 3 out of 3 in the Rat Protein Geranylgeranyltransferase Type-I Complexed with A Ggpp Analog and A Rrcvll Peptide Derived From CDC42 Splice Isoform-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Rat Protein Geranylgeranyltransferase Type-I Complexed with A Ggpp Analog and A Rrcvll Peptide Derived From CDC42 Splice Isoform-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl379

b:87.6
occ:1.00
N H:PHE286 3.3 74.0 1.0
C H:LYS284 3.4 75.9 1.0
N H:GLN287 3.4 74.6 1.0
N H:ILE285 3.5 74.8 1.0
CA H:LYS284 3.6 76.3 1.0
CD H:LYS281 3.6 80.5 1.0
O H:LYS284 3.8 75.9 1.0
CG H:GLN287 3.8 78.9 1.0
CB H:PHE286 3.9 74.1 1.0
CB H:GLN287 3.9 75.0 1.0
NE2 H:GLN287 4.0 81.0 1.0
CA H:PHE286 4.0 74.1 1.0
C H:ILE285 4.0 73.5 1.0
CA H:ILE285 4.1 73.7 1.0
C H:PHE286 4.2 73.5 1.0
O H:LYS281 4.3 77.7 1.0
CA H:GLN287 4.3 75.4 1.0
CD H:GLN287 4.3 80.8 1.0
CA H:LYS281 4.4 76.4 1.0
CE H:LYS281 4.4 83.2 1.0
O H:LEU280 4.6 77.3 1.0
N H:LYS284 4.6 77.8 1.0
CB H:LYS284 4.7 75.3 1.0
C H:LYS281 4.8 75.7 1.0
CG H:LYS281 4.9 78.6 1.0

Reference:

T.S.Reid, K.L.Terry, P.J.Casey, L.S.Beese. Crystallographic Analysis of Caax Prenyltransferases Complexed with Substrates Defines Rules of Protein Substrate Selectivity. J.Mol.Biol. V. 343 417 2004.
ISSN: ISSN 0022-2836
PubMed: 15451670
DOI: 10.1016/J.JMB.2004.08.056
Page generated: Sat Dec 12 08:50:19 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy