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Chlorine in PDB 1ty8: Crystal Structure of Yeast YMX7, An Adp-Ribose-1''-Monophosphatase, Complexed with Adp

Protein crystallography data

The structure of Crystal Structure of Yeast YMX7, An Adp-Ribose-1''-Monophosphatase, Complexed with Adp, PDB code: 1ty8 was solved by D.Kumaran, S.Swaminathan, S.K.Burley, New York Sgx Research Center Forstructural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.10
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 107.948, 38.054, 63.137, 90.00, 111.75, 90.00
R / Rfree (%) 19 / 24.4

Other elements in 1ty8:

The structure of Crystal Structure of Yeast YMX7, An Adp-Ribose-1''-Monophosphatase, Complexed with Adp also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Yeast YMX7, An Adp-Ribose-1''-Monophosphatase, Complexed with Adp (pdb code 1ty8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Yeast YMX7, An Adp-Ribose-1''-Monophosphatase, Complexed with Adp, PDB code: 1ty8:

Chlorine binding site 1 out of 1 in 1ty8

Go back to Chlorine Binding Sites List in 1ty8
Chlorine binding site 1 out of 1 in the Crystal Structure of Yeast YMX7, An Adp-Ribose-1''-Monophosphatase, Complexed with Adp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Yeast YMX7, An Adp-Ribose-1''-Monophosphatase, Complexed with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:19.5
occ:1.00
N6 A:ADP285 3.3 13.5 1.0
N A:GLN55 3.4 27.6 1.0
N A:LEU54 3.6 24.3 1.0
CB A:HIS53 3.6 28.0 1.0
CB A:ALA92 3.7 11.0 1.0
CB A:GLN55 3.8 34.2 1.0
CB A:LEU54 4.0 23.8 1.0
ND1 A:HIS53 4.1 32.4 1.0
CA A:LEU54 4.2 25.3 1.0
CA A:GLN55 4.2 29.1 1.0
C A:HIS53 4.2 25.5 1.0
C A:LEU54 4.2 25.6 1.0
CG A:HIS53 4.3 30.7 1.0
C6 A:ADP285 4.3 14.7 1.0
CA A:HIS53 4.3 26.1 1.0
N1 A:ADP285 4.4 13.2 1.0
CA A:ALA92 4.5 15.3 1.0
O A:HOH335 5.0 21.8 1.0

Reference:

D.Kumaran, S.Swaminathan. Crystal Structure of Yeast Hypothetical Protein YMX7 To Be Published.
Page generated: Sat Jul 20 02:36:30 2024

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