Chlorine in PDB 1tzy: Crystal Structure of the Core-Histone Octamer to 1.90 Angstrom Resolution

The structure of Crystal Structure of the Core-Histone Octamer to 1.90 Angstrom Resolution, PDB code: 1tzy was solved by C.M.Wood, J.M.Nicholson, L.Chantalat, C.D.Reynolds, S.J.Lambert, J.P.Baldwin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	14.96 / 1.90
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	158.351, 158.351, 103.576, 90.00, 90.00, 120.00
R / Rfree (%)	18.7 / 22.2

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 23;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of the Core-Histone Octamer to 1.90 Angstrom Resolution (pdb code 1tzy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 23 binding sites of Chlorine where determined in the Crystal Structure of the Core-Histone Octamer to 1.90 Angstrom Resolution, PDB code: 1tzy:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 23 in the Crystal Structure of the Core-Histone Octamer to 1.90 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Core-Histone Octamer to 1.90 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1604 b:38.6 occ:1.00 O A:HOH1627 3.1 37.9 1.0 O A:HOH1655 3.2 41.7 1.0 NH1 A:ARG35 3.4 31.5 1.0 CD A:ARG35 3.6 34.0 1.0 CA A:ARG32 3.9 33.6 1.0 CB A:ARG32 4.1 35.0 1.0 CZ A:ARG35 4.3 30.2 1.0 N A:ARG32 4.4 33.9 1.0 NE A:ARG35 4.4 34.0 1.0 CG A:ARG32 4.7 32.7 1.0 NE A:ARG32 4.8 40.6 1.0 CG A:ARG35 4.8 31.6 1.0 C A:HIS31 4.9 32.4 1.0 O A:HIS31 4.9 34.0 1.0 CD A:ARG32 4.9 43.6 1.0

Chlorine binding site 2 out of 23 in the Crystal Structure of the Core-Histone Octamer to 1.90 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Core-Histone Octamer to 1.90 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1613 b:71.8 occ:1.00 OD1 A:ASN89 3.4 47.2 1.0 O A:LEU85 3.6 41.4 1.0 CB A:ALA69 3.8 51.9 1.0 C A:LEU85 3.9 38.6 1.0 CB A:LEU85 4.0 39.3 1.0 CB A:ASN89 4.0 42.9 1.0 CG A:ASN89 4.1 44.9 1.0 O A:HOH1644 4.1 40.8 1.0 N A:ALA86 4.1 41.5 1.0 CA A:ALA86 4.2 41.9 1.0 CA A:LEU85 4.6 39.1 1.0 CA A:ALA69 4.6 52.2 1.0 O A:LEU65 5.0 45.8 1.0

Chlorine binding site 3 out of 23 in the Crystal Structure of the Core-Histone Octamer to 1.90 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Core-Histone Octamer to 1.90 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1620 b:68.9 occ:1.00 O G:HOH1670 3.2 56.3 1.0 N A:ILE111 3.3 42.7 1.0 O A:HOH1693 3.5 57.0 1.0 CA A:ASN110 3.8 45.0 1.0 O A:ILE111 4.0 43.5 1.0 C A:ASN110 4.0 43.9 1.0 OD1 A:ASN110 4.2 48.8 1.0 CA A:ILE111 4.2 43.6 1.0 CB A:ILE111 4.3 43.7 1.0 N A:ASN110 4.4 45.7 1.0 CG1 A:ILE111 4.5 46.3 1.0 O A:PRO109 4.6 46.9 1.0 C A:ILE111 4.6 43.5 1.0 C A:PRO109 4.7 45.9 1.0 CG A:ASN110 4.9 47.6 1.0 CB A:ASN110 4.9 45.5 1.0

Chlorine binding site 4 out of 23 in the Crystal Structure of the Core-Histone Octamer to 1.90 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the Core-Histone Octamer to 1.90 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1622 b:46.4 occ:1.00 O A:HOH1710 3.2 67.0 1.0 NH1 A:ARG29 3.2 40.8 1.0 CD A:ARG29 3.5 42.9 1.0 O A:HOH1716 3.7 85.7 1.0 CB A:ARG32 3.9 35.0 1.0 CG A:ARG32 4.1 32.7 1.0 CA A:ARG29 4.2 37.6 1.0 CZ A:ARG29 4.2 42.1 1.0 CD A:ARG32 4.3 43.6 1.0 NE A:ARG29 4.3 42.6 1.0 O2 A:PO41501 4.5 47.7 1.0 CB A:ARG29 4.5 37.2 1.0 CG A:ARG29 4.6 42.0 1.0 O A:GLY28 4.6 35.3 1.0 N A:ARG29 4.7 36.4 1.0 C A:GLY28 4.9 37.0 1.0

Chlorine binding site 5 out of 23 in the Crystal Structure of the Core-Histone Octamer to 1.90 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of the Core-Histone Octamer to 1.90 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1606 b:41.5 occ:1.00 N A:GLY46 3.2 35.9 1.0 N B:SER91 3.3 38.7 1.0 CB B:THR90 3.4 40.2 1.0 CA B:THR90 3.5 39.1 1.0 O B:HOH1644 3.5 47.3 1.0 C A:GLY44 3.6 39.2 1.0 N A:ALA47 3.6 36.1 1.0 CA A:GLY46 3.6 36.6 1.0 CA A:GLY44 3.7 40.1 1.0 N A:ALA45 3.8 39.0 1.0 C B:THR90 3.9 39.1 1.0 O A:GLY44 4.0 39.5 1.0 C A:GLY46 4.0 36.0 1.0 CG2 B:THR90 4.1 39.5 1.0 C A:ALA45 4.3 36.5 1.0 CB B:SER91 4.3 39.9 1.0 OG B:SER91 4.4 40.9 1.0 CA B:SER91 4.4 39.3 1.0 CA A:ALA45 4.6 37.0 1.0 N A:GLY44 4.6 38.8 1.0 OG1 B:THR90 4.7 42.3 1.0 O A:HOH1640 4.7 43.2 1.0 CA A:ALA47 4.7 35.5 1.0 CB A:ALA47 4.7 36.3 1.0 O B:ILE89 4.8 35.7 1.0 N B:THR90 4.8 37.4 1.0

Chlorine binding site 6 out of 23 in the Crystal Structure of the Core-Histone Octamer to 1.90 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of the Core-Histone Octamer to 1.90 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1614 b:44.1 occ:1.00 OG B:SER64 3.0 31.9 1.0 O B:HOH1619 3.1 43.5 1.0 O H:HOH1619 3.1 32.3 1.0 O B:HOH1620 3.3 40.1 1.0 CA H:GLY101 3.6 48.0 1.0 CB B:SER64 3.6 32.2 1.0 O H:HOH1631 3.7 39.7 1.0 N H:GLY101 3.8 43.1 1.0 CE B:LYS34 3.8 59.0 1.0 CA B:SER64 3.8 32.5 1.0 CD B:LYS34 4.1 54.6 1.0 NZ B:LYS34 4.1 56.6 1.0 O B:HOH1617 4.1 37.3 1.0 CG B:LYS34 4.2 53.7 1.0 CE H:MET84 4.4 46.4 1.0 C H:PHE100 4.7 41.3 1.0 O H:LEU97 4.7 27.8 1.0 CB B:LYS34 4.7 53.6 1.0 N B:SER64 4.8 33.0 1.0 CG1 H:VAL87 4.8 31.7 1.0 N H:PHE100 4.9 36.0 1.0 C H:GLY101 4.9 51.7 1.0 C B:SER64 4.9 32.1 1.0 O B:SER64 5.0 33.9 1.0

Chlorine binding site 7 out of 23 in the Crystal Structure of the Core-Histone Octamer to 1.90 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of the Core-Histone Octamer to 1.90 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1607 b:47.4 occ:1.00 N C:LYS122 3.2 40.6 1.0 CG C:LYS122 3.5 45.9 1.0 CB C:LYS122 3.6 41.9 1.0 CD C:PRO121 3.7 40.9 1.0 CB C:PRO121 3.9 40.6 1.0 N C:PRO121 3.9 39.5 1.0 CE C:MET120 3.9 52.1 1.0 CA C:LYS122 4.0 41.6 1.0 CB C:MET120 4.0 38.0 1.0 CD C:LYS122 4.1 49.4 1.0 C C:PRO121 4.1 41.4 1.0 CA C:PRO121 4.2 40.6 1.0 CG C:PRO121 4.3 40.4 1.0 C C:MET120 4.5 38.3 1.0 CE C:LYS122 4.5 53.6 1.0 CG C:MET120 4.8 43.9 1.0 CA C:MET120 4.8 37.7 1.0 O D:HOH1681 4.9 67.5 1.0 SD C:MET120 4.9 49.6 1.0

Chlorine binding site 8 out of 23 in the Crystal Structure of the Core-Histone Octamer to 1.90 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of the Core-Histone Octamer to 1.90 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1615 b:49.6 occ:1.00 OG1 C:THR118 3.1 42.0 1.0 N C:VAL117 3.2 43.8 1.0 N C:THR118 3.3 39.5 1.0 CB C:THR118 3.5 41.6 1.0 CB C:ARG116 3.7 43.2 1.0 CA C:ARG116 3.8 43.2 1.0 CG C:ARG116 4.0 44.5 1.0 C C:ARG116 4.1 43.7 1.0 CA C:THR118 4.1 39.5 1.0 CA C:VAL117 4.1 42.4 1.0 C C:VAL117 4.1 40.3 1.0 CB C:VAL117 4.3 46.3 1.0 CG1 C:VAL117 4.3 47.7 1.0 CG2 C:THR118 4.8 44.2 1.0 O C:THR118 4.9 37.6 1.0

Chlorine binding site 9 out of 23 in the Crystal Structure of the Core-Histone Octamer to 1.90 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of the Core-Histone Octamer to 1.90 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1619 b:61.1 occ:1.00 O D:HOH1663 2.9 61.1 1.0 NH1 C:ARG128 3.1 44.6 1.0 CG C:GLN125 3.4 45.7 1.0 CD C:ARG128 3.5 37.8 1.0 CA C:GLN125 3.6 38.9 1.0 CB C:GLN125 3.9 40.2 1.0 NE C:ARG134 4.0 81.6 1.0 CZ C:ARG128 4.1 38.7 1.0 CB C:ARG128 4.1 35.0 1.0 CG C:ARG134 4.2 70.8 1.0 NE C:ARG128 4.2 36.7 1.0 CG C:ARG128 4.3 35.0 1.0 N C:GLN125 4.3 37.4 1.0 O C:ILE124 4.5 34.7 1.0 O C:GLN125 4.6 37.4 1.0 CD C:ARG134 4.6 77.3 1.0 C C:ILE124 4.6 37.8 1.0 C C:GLN125 4.7 38.0 1.0 CG2 C:ILE124 4.7 37.9 1.0 O C:HOH1669 4.8 77.3 1.0 CD C:GLN125 4.8 52.3 1.0 CB C:ARG134 4.8 67.2 1.0 OE2 D:GLU53 4.9 53.4 1.0 CG1 D:VAL57 5.0 39.1 1.0

Chlorine binding site 10 out of 23 in the Crystal Structure of the Core-Histone Octamer to 1.90 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of the Core-Histone Octamer to 1.90 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl1603 b:45.5 occ:1.00 O D:HOH1683 3.0 58.9 1.0 N D:ILE46 3.2 40.0 1.0 NH1 D:ARG39 3.4 46.8 1.0 CA D:ARG45 3.7 42.6 1.0 CB D:ILE46 3.9 40.9 1.0 C D:ARG45 3.9 41.8 1.0 NH2 D:ARG39 3.9 42.1 1.0 CG1 D:ILE46 4.0 41.3 1.0 O D:HOH1649 4.0 49.2 1.0 CA D:ILE46 4.1 41.5 1.0 CZ D:ARG39 4.1 43.0 1.0 O D:ILE46 4.2 43.6 1.0 O D:LYS44 4.2 42.6 1.0 CG D:ARG45 4.2 48.1 1.0 CD1 D:ILE46 4.3 44.0 1.0 CB D:ARG45 4.5 43.9 1.0 C D:ILE46 4.6 42.9 1.0 N D:ARG45 4.6 41.5 1.0 O D:HOH1684 4.7 58.7 1.0 O D:HOH1689 4.8 93.3 1.0 C D:LYS44 4.8 41.5 1.0

C.M.Wood, J.M.Nicholson, S.J.Lambert, L.Chantalat, C.D.Reynolds, J.P.Baldwin. High-Resolution Structure of the Native Histone Octamer. Acta Crystallogr.,Sect.F V. 61 541 2005.
ISSN: ESSN 1744-3091
PubMed: 16511091
DOI: 10.1107/S1744309105013813