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Chlorine in PDB 1uhy: Crystal Structure of D(Gcgatagc): the Base-Intercalated Duplex

Protein crystallography data

The structure of Crystal Structure of D(Gcgatagc): the Base-Intercalated Duplex, PDB code: 1uhy was solved by J.Kondo, S.I.Umeda, K.Fujita, T.Sunami, A.Takenaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 22.87 / 1.70
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 37.000, 37.000, 65.300, 90.00, 90.00, 120.00
R / Rfree (%) 22.4 / 23.9

Other elements in 1uhy:

The structure of Crystal Structure of D(Gcgatagc): the Base-Intercalated Duplex also contains other interesting chemical elements:

Cobalt (Co) 2 atoms
Bromine (Br) 1 atom
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of D(Gcgatagc): the Base-Intercalated Duplex (pdb code 1uhy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of D(Gcgatagc): the Base-Intercalated Duplex, PDB code: 1uhy:

Chlorine binding site 1 out of 1 in 1uhy

Go back to Chlorine Binding Sites List in 1uhy
Chlorine binding site 1 out of 1 in the Crystal Structure of D(Gcgatagc): the Base-Intercalated Duplex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of D(Gcgatagc): the Base-Intercalated Duplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl103

b:27.2
occ:0.33
N2 A:NCO100 4.2 44.1 0.2
N6 A:NCO100 4.2 44.1 0.2
N3 A:NCO100 4.2 44.1 0.2
O4 A:DT5 4.7 38.9 1.0

Reference:

J.Kondo, S.I.Umeda, K.Fujita, T.Sunami, A.Takenaka. X-Ray Analyses of D(Gcgaxagc) Containing G and T at X: the Base-Intercalated Duplex Is Still Stable Even in Point Mutants at the Fifth Residue. J.Synchrotron Radiat. V. 11 117 2004.
ISSN: ISSN 0909-0495
PubMed: 14646150
DOI: 10.1107/S0909049503023562
Page generated: Sat Jul 20 02:44:47 2024

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