Chlorine in PDB 1uj5: Crystal Structure of Thermus Thermophilus Ribose-5-Phosphate Isomerase Complexed with Ribose-5-Phosphate

All present enzymatic activity of Crystal Structure of Thermus Thermophilus Ribose-5-Phosphate Isomerase Complexed with Ribose-5-Phosphate:
5.3.1.6;

The structure of Crystal Structure of Thermus Thermophilus Ribose-5-Phosphate Isomerase Complexed with Ribose-5-Phosphate, PDB code: 1uj5 was solved by K.Hamada, H.Ago, M.Sugahara, Y.Nodake, S.Kuramitsu, S.Yokoyama, M.Miyano, Riken Structural Genomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.81 / 2.00
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	61.892, 62.009, 131.172, 90.00, 90.00, 90.00
R / Rfree (%)	18.8 / 23.9

The binding sites of Chlorine atom in the Crystal Structure of Thermus Thermophilus Ribose-5-Phosphate Isomerase Complexed with Ribose-5-Phosphate (pdb code 1uj5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Thermus Thermophilus Ribose-5-Phosphate Isomerase Complexed with Ribose-5-Phosphate, PDB code: 1uj5:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Thermus Thermophilus Ribose-5-Phosphate Isomerase Complexed with Ribose-5-Phosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Thermus Thermophilus Ribose-5-Phosphate Isomerase Complexed with Ribose-5-Phosphate within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl300 b:8.9 occ:1.00 O A:HOH421 3.1 14.9 1.0 O A:HOH573 3.1 37.5 1.0 O A:HOH408 3.1 6.6 1.0 NH2 A:ARG107 3.4 7.5 1.0 CA A:GLY173 3.9 8.1 1.0 NE A:ARG107 4.3 5.4 1.0 CZ A:ARG107 4.3 7.2 1.0 O A:HOH664 4.6 34.0 1.0 N A:GLY173 4.8 7.5 1.0 O A:GLY173 4.8 7.4 1.0 C A:GLY173 4.8 6.9 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Thermus Thermophilus Ribose-5-Phosphate Isomerase Complexed with Ribose-5-Phosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Thermus Thermophilus Ribose-5-Phosphate Isomerase Complexed with Ribose-5-Phosphate within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl301 b:21.4 occ:1.00 N A:GLY144 3.1 8.4 1.0 CA A:GLY144 3.5 7.5 1.0 CD1 A:PHE143 4.2 11.4 1.0 CE1 A:PHE143 4.2 10.8 1.0 C A:PHE143 4.3 8.9 1.0 NH1 A:ARG146 4.3 26.3 1.0 CA A:PHE143 4.6 8.4 1.0 C A:GLY144 4.6 8.6 1.0 CG A:PHE143 4.7 10.7 1.0 CZ A:PHE143 4.7 10.9 1.0 N A:TYR145 4.9 8.2 1.0

K.Hamada, H.Ago, M.Sugahara, Y.Nodake, S.Kuramitsu, M.Miyano. Oxyanion Hole-Stabilized Stereospecific Isomerization in Ribose-5-Phosphate Isomerase (Rpi) J.Biol.Chem. V. 278 49183 2003.
ISSN: ISSN 0021-9258
PubMed: 13679361
DOI: 10.1074/JBC.M309272200