Atomistry » Chlorine » PDB 1u33-1usz » 1uj5
Atomistry »
  Chlorine »
    PDB 1u33-1usz »
      1uj5 »

Chlorine in PDB 1uj5: Crystal Structure of Thermus Thermophilus Ribose-5-Phosphate Isomerase Complexed with Ribose-5-Phosphate

Enzymatic activity of Crystal Structure of Thermus Thermophilus Ribose-5-Phosphate Isomerase Complexed with Ribose-5-Phosphate

All present enzymatic activity of Crystal Structure of Thermus Thermophilus Ribose-5-Phosphate Isomerase Complexed with Ribose-5-Phosphate:
5.3.1.6;

Protein crystallography data

The structure of Crystal Structure of Thermus Thermophilus Ribose-5-Phosphate Isomerase Complexed with Ribose-5-Phosphate, PDB code: 1uj5 was solved by K.Hamada, H.Ago, M.Sugahara, Y.Nodake, S.Kuramitsu, S.Yokoyama, M.Miyano, Riken Structural Genomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.81 / 2.00
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 61.892, 62.009, 131.172, 90.00, 90.00, 90.00
R / Rfree (%) 18.8 / 23.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Thermus Thermophilus Ribose-5-Phosphate Isomerase Complexed with Ribose-5-Phosphate (pdb code 1uj5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Thermus Thermophilus Ribose-5-Phosphate Isomerase Complexed with Ribose-5-Phosphate, PDB code: 1uj5:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1uj5

Go back to Chlorine Binding Sites List in 1uj5
Chlorine binding site 1 out of 2 in the Crystal Structure of Thermus Thermophilus Ribose-5-Phosphate Isomerase Complexed with Ribose-5-Phosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Thermus Thermophilus Ribose-5-Phosphate Isomerase Complexed with Ribose-5-Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl300

b:8.9
occ:1.00
O A:HOH421 3.1 14.9 1.0
O A:HOH573 3.1 37.5 1.0
O A:HOH408 3.1 6.6 1.0
NH2 A:ARG107 3.4 7.5 1.0
CA A:GLY173 3.9 8.1 1.0
NE A:ARG107 4.3 5.4 1.0
CZ A:ARG107 4.3 7.2 1.0
O A:HOH664 4.6 34.0 1.0
N A:GLY173 4.8 7.5 1.0
O A:GLY173 4.8 7.4 1.0
C A:GLY173 4.8 6.9 1.0

Chlorine binding site 2 out of 2 in 1uj5

Go back to Chlorine Binding Sites List in 1uj5
Chlorine binding site 2 out of 2 in the Crystal Structure of Thermus Thermophilus Ribose-5-Phosphate Isomerase Complexed with Ribose-5-Phosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Thermus Thermophilus Ribose-5-Phosphate Isomerase Complexed with Ribose-5-Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:21.4
occ:1.00
N A:GLY144 3.1 8.4 1.0
CA A:GLY144 3.5 7.5 1.0
CD1 A:PHE143 4.2 11.4 1.0
CE1 A:PHE143 4.2 10.8 1.0
C A:PHE143 4.3 8.9 1.0
NH1 A:ARG146 4.3 26.3 1.0
CA A:PHE143 4.6 8.4 1.0
C A:GLY144 4.6 8.6 1.0
CG A:PHE143 4.7 10.7 1.0
CZ A:PHE143 4.7 10.9 1.0
N A:TYR145 4.9 8.2 1.0

Reference:

K.Hamada, H.Ago, M.Sugahara, Y.Nodake, S.Kuramitsu, M.Miyano. Oxyanion Hole-Stabilized Stereospecific Isomerization in Ribose-5-Phosphate Isomerase (Rpi) J.Biol.Chem. V. 278 49183 2003.
ISSN: ISSN 0021-9258
PubMed: 13679361
DOI: 10.1074/JBC.M309272200
Page generated: Sat Dec 12 08:50:50 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy