Chlorine in PDB 1uyr: Acetyl-Coa Carboxylase Carboxyltransferase Domain in Complex with Inhibitor Diclofop
Enzymatic activity of Acetyl-Coa Carboxylase Carboxyltransferase Domain in Complex with Inhibitor Diclofop
All present enzymatic activity of Acetyl-Coa Carboxylase Carboxyltransferase Domain in Complex with Inhibitor Diclofop:
6.4.1.2;
Protein crystallography data
The structure of Acetyl-Coa Carboxylase Carboxyltransferase Domain in Complex with Inhibitor Diclofop, PDB code: 1uyr
was solved by
H.Zhang,
B.Tweel,
L.Tong,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.58 /
2.5
|
Space group
|
P 32 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
136.780,
136.780,
244.410,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
21.7 /
24.8
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Acetyl-Coa Carboxylase Carboxyltransferase Domain in Complex with Inhibitor Diclofop
(pdb code 1uyr). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Acetyl-Coa Carboxylase Carboxyltransferase Domain in Complex with Inhibitor Diclofop, PDB code: 1uyr:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 1uyr
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Chlorine Binding Sites List in 1uyr
Chlorine binding site 1 out
of 4 in the Acetyl-Coa Carboxylase Carboxyltransferase Domain in Complex with Inhibitor Diclofop
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Acetyl-Coa Carboxylase Carboxyltransferase Domain in Complex with Inhibitor Diclofop within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl3219
b:74.9
occ:1.00
|
CL12
|
A:D1L3219
|
0.0
|
74.9
|
1.0
|
C12
|
A:D1L3219
|
1.7
|
78.4
|
1.0
|
C13
|
A:D1L3219
|
2.7
|
80.1
|
1.0
|
C11
|
A:D1L3219
|
2.7
|
78.7
|
1.0
|
CD2
|
B:TRP1924
|
3.5
|
43.4
|
1.0
|
CG
|
B:TRP1924
|
3.7
|
45.5
|
1.0
|
CE3
|
B:TRP1924
|
3.7
|
43.1
|
1.0
|
CA
|
B:GLY1971
|
3.8
|
33.7
|
1.0
|
C14
|
A:D1L3219
|
4.0
|
80.8
|
1.0
|
CE2
|
B:TRP1924
|
4.0
|
43.7
|
1.0
|
C10
|
A:D1L3219
|
4.0
|
80.6
|
1.0
|
CB
|
B:TRP1924
|
4.1
|
46.1
|
1.0
|
CD1
|
B:ILE1974
|
4.1
|
25.9
|
1.0
|
CG1
|
B:VAL2002
|
4.1
|
38.0
|
1.0
|
CD1
|
B:TRP1924
|
4.2
|
46.0
|
1.0
|
CB
|
B:ALA1929
|
4.3
|
32.0
|
1.0
|
CZ3
|
B:TRP1924
|
4.3
|
47.2
|
1.0
|
NE1
|
B:TRP1924
|
4.4
|
44.6
|
1.0
|
C9
|
A:D1L3219
|
4.5
|
80.6
|
1.0
|
CG2
|
B:VAL2002
|
4.6
|
39.6
|
1.0
|
CZ2
|
B:TRP1924
|
4.6
|
43.9
|
1.0
|
CG1
|
B:VAL1967
|
4.6
|
44.0
|
1.0
|
N
|
B:GLY1971
|
4.7
|
34.8
|
1.0
|
CH2
|
B:TRP1924
|
4.7
|
46.8
|
1.0
|
CB
|
B:VAL2002
|
4.8
|
36.1
|
1.0
|
C
|
B:GLY1971
|
5.0
|
35.8
|
1.0
|
O
|
B:VAL1967
|
5.0
|
40.5
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 1uyr
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Chlorine Binding Sites List in 1uyr
Chlorine binding site 2 out
of 4 in the Acetyl-Coa Carboxylase Carboxyltransferase Domain in Complex with Inhibitor Diclofop
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Acetyl-Coa Carboxylase Carboxyltransferase Domain in Complex with Inhibitor Diclofop within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl3219
b:88.0
occ:1.00
|
CL14
|
A:D1L3219
|
0.0
|
88.0
|
1.0
|
C14
|
A:D1L3219
|
1.7
|
80.8
|
1.0
|
C13
|
A:D1L3219
|
2.7
|
80.1
|
1.0
|
C9
|
A:D1L3219
|
2.7
|
80.6
|
1.0
|
O8
|
A:D1L3219
|
2.9
|
79.2
|
1.0
|
CD1
|
B:LEU1968
|
3.1
|
37.5
|
1.0
|
CD2
|
A:TYR1738
|
3.2
|
43.5
|
1.0
|
CE2
|
A:TYR1738
|
3.3
|
44.7
|
1.0
|
CA
|
B:LEU1968
|
3.4
|
37.2
|
1.0
|
O
|
B:LEU1968
|
3.6
|
34.1
|
1.0
|
O
|
B:VAL1967
|
3.9
|
40.5
|
1.0
|
C
|
B:LEU1968
|
4.0
|
36.7
|
1.0
|
C12
|
A:D1L3219
|
4.0
|
78.4
|
1.0
|
C10
|
A:D1L3219
|
4.0
|
80.6
|
1.0
|
CG
|
A:TYR1738
|
4.0
|
42.0
|
1.0
|
N
|
B:LEU1968
|
4.1
|
39.0
|
1.0
|
CG
|
B:LEU1968
|
4.2
|
38.2
|
1.0
|
CZ
|
A:TYR1738
|
4.2
|
47.1
|
1.0
|
C8
|
A:D1L3219
|
4.2
|
78.4
|
1.0
|
CB
|
B:LEU1968
|
4.2
|
38.3
|
1.0
|
CD2
|
A:LEU1756
|
4.2
|
52.4
|
1.0
|
C
|
B:VAL1967
|
4.3
|
41.9
|
1.0
|
CD1
|
A:LEU1756
|
4.4
|
53.6
|
1.0
|
CA
|
B:GLY1971
|
4.5
|
33.7
|
1.0
|
C11
|
A:D1L3219
|
4.5
|
78.7
|
1.0
|
CG1
|
B:VAL1967
|
4.6
|
44.0
|
1.0
|
CB
|
A:TYR1738
|
4.7
|
37.4
|
1.0
|
CA
|
A:TYR1738
|
4.7
|
33.4
|
1.0
|
CD1
|
A:TYR1738
|
4.8
|
44.3
|
1.0
|
C5
|
A:D1L3219
|
4.8
|
78.5
|
1.0
|
CE1
|
A:TYR1738
|
4.9
|
45.6
|
1.0
|
N
|
B:SER1972
|
4.9
|
35.6
|
1.0
|
OH
|
A:TYR1738
|
4.9
|
51.3
|
1.0
|
N
|
B:GLY1971
|
4.9
|
34.8
|
1.0
|
C
|
B:GLY1971
|
4.9
|
35.8
|
1.0
|
CG
|
A:LEU1756
|
5.0
|
53.8
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 1uyr
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Chlorine Binding Sites List in 1uyr
Chlorine binding site 3 out
of 4 in the Acetyl-Coa Carboxylase Carboxyltransferase Domain in Complex with Inhibitor Diclofop
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Acetyl-Coa Carboxylase Carboxyltransferase Domain in Complex with Inhibitor Diclofop within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl3219
b:73.2
occ:1.00
|
CL12
|
B:D1L3219
|
0.0
|
73.2
|
1.0
|
C12
|
B:D1L3219
|
1.7
|
77.0
|
1.0
|
C13
|
B:D1L3219
|
2.7
|
80.0
|
1.0
|
C11
|
B:D1L3219
|
2.7
|
76.8
|
1.0
|
CD2
|
A:TRP1924
|
3.4
|
44.6
|
1.0
|
CE3
|
A:TRP1924
|
3.5
|
44.0
|
1.0
|
CG
|
A:TRP1924
|
3.6
|
46.3
|
1.0
|
CB
|
A:TRP1924
|
3.9
|
47.6
|
1.0
|
C14
|
B:D1L3219
|
4.0
|
80.8
|
1.0
|
CE2
|
A:TRP1924
|
4.0
|
44.1
|
1.0
|
C10
|
B:D1L3219
|
4.0
|
78.8
|
1.0
|
CA
|
A:GLY1971
|
4.1
|
34.0
|
1.0
|
CZ3
|
A:TRP1924
|
4.1
|
46.2
|
1.0
|
CD1
|
A:TRP1924
|
4.2
|
43.6
|
1.0
|
CB
|
A:ALA1929
|
4.2
|
31.8
|
1.0
|
CD1
|
A:ILE1974
|
4.3
|
23.7
|
1.0
|
NE1
|
A:TRP1924
|
4.5
|
44.8
|
1.0
|
C9
|
B:D1L3219
|
4.5
|
79.9
|
1.0
|
CG2
|
A:VAL2002
|
4.5
|
33.7
|
1.0
|
CG1
|
A:VAL1967
|
4.6
|
46.9
|
1.0
|
CZ2
|
A:TRP1924
|
4.6
|
43.7
|
1.0
|
CG1
|
A:VAL2002
|
4.6
|
34.6
|
1.0
|
CH2
|
A:TRP1924
|
4.6
|
45.3
|
1.0
|
CD1
|
A:PHE1956
|
4.9
|
76.7
|
1.0
|
N
|
A:GLY1971
|
4.9
|
36.8
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 1uyr
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Chlorine Binding Sites List in 1uyr
Chlorine binding site 4 out
of 4 in the Acetyl-Coa Carboxylase Carboxyltransferase Domain in Complex with Inhibitor Diclofop
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Acetyl-Coa Carboxylase Carboxyltransferase Domain in Complex with Inhibitor Diclofop within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl3219
b:89.2
occ:1.00
|
CL14
|
B:D1L3219
|
0.0
|
89.2
|
1.0
|
C14
|
B:D1L3219
|
1.7
|
80.8
|
1.0
|
C13
|
B:D1L3219
|
2.7
|
80.0
|
1.0
|
C9
|
B:D1L3219
|
2.7
|
79.9
|
1.0
|
O8
|
B:D1L3219
|
2.9
|
78.1
|
1.0
|
CD2
|
A:LEU1968
|
3.2
|
38.9
|
1.0
|
CD2
|
B:TYR1738
|
3.4
|
44.6
|
1.0
|
CA
|
A:LEU1968
|
3.4
|
40.6
|
1.0
|
CD2
|
B:LEU1756
|
3.5
|
46.6
|
1.0
|
CE2
|
B:TYR1738
|
3.6
|
49.6
|
1.0
|
CD1
|
B:LEU1756
|
3.7
|
46.0
|
1.0
|
CG
|
A:LEU1968
|
3.8
|
39.6
|
1.0
|
O
|
A:VAL1967
|
3.9
|
42.7
|
1.0
|
N
|
A:LEU1968
|
4.0
|
41.6
|
1.0
|
C12
|
B:D1L3219
|
4.0
|
77.0
|
1.0
|
C10
|
B:D1L3219
|
4.0
|
78.8
|
1.0
|
C
|
A:VAL1967
|
4.1
|
45.1
|
1.0
|
CB
|
A:LEU1968
|
4.2
|
41.1
|
1.0
|
CG
|
B:LEU1756
|
4.2
|
46.6
|
1.0
|
O
|
A:LEU1968
|
4.2
|
37.7
|
1.0
|
C8
|
B:D1L3219
|
4.2
|
77.8
|
1.0
|
C
|
A:LEU1968
|
4.3
|
40.3
|
1.0
|
CG
|
B:TYR1738
|
4.4
|
43.1
|
1.0
|
CG1
|
A:VAL1967
|
4.4
|
46.9
|
1.0
|
C11
|
B:D1L3219
|
4.5
|
76.8
|
1.0
|
CZ
|
B:TYR1738
|
4.7
|
52.2
|
1.0
|
CB
|
B:TYR1738
|
4.9
|
39.7
|
1.0
|
C7
|
B:D1L3219
|
4.9
|
77.6
|
1.0
|
CA
|
B:TYR1738
|
5.0
|
34.4
|
1.0
|
CA
|
A:GLY1971
|
5.0
|
34.0
|
1.0
|
|
Reference:
H.Zhang,
B.Tweel,
L.Tong.
Molecular Basis For the Inhibition of the Carboxyltransferase Domain of Acetyl-Coenzyme-A Carboxylase By Haloxyfop and Diclofop Proc.Natl.Acad.Sci.Usa V. 101 5910 2004.
ISSN: ISSN 0027-8424
PubMed: 15079078
DOI: 10.1073/PNAS.0400891101
Page generated: Sat Jul 20 02:53:09 2024
|