Atomistry » Chlorine » PDB 1v8f-1vq0 » 1va0
Atomistry »
  Chlorine »
    PDB 1v8f-1vq0 »
      1va0 »

Chlorine in PDB 1va0: Crystal Structure of the Native Form of Uroporphyrin III C-Methyl Transferase From Thermus Thermophilus

Enzymatic activity of Crystal Structure of the Native Form of Uroporphyrin III C-Methyl Transferase From Thermus Thermophilus

All present enzymatic activity of Crystal Structure of the Native Form of Uroporphyrin III C-Methyl Transferase From Thermus Thermophilus:
2.1.1.107;

Protein crystallography data

The structure of Crystal Structure of the Native Form of Uroporphyrin III C-Methyl Transferase From Thermus Thermophilus, PDB code: 1va0 was solved by P.H.Rehse, T.Kitao, T.H.Tahirov, Riken Structural Genomics/Proteomicsinitiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.78 / 1.97
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 60.500, 63.568, 131.902, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 22.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Native Form of Uroporphyrin III C-Methyl Transferase From Thermus Thermophilus (pdb code 1va0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of the Native Form of Uroporphyrin III C-Methyl Transferase From Thermus Thermophilus, PDB code: 1va0:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 1va0

Go back to Chlorine Binding Sites List in 1va0
Chlorine binding site 1 out of 3 in the Crystal Structure of the Native Form of Uroporphyrin III C-Methyl Transferase From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Native Form of Uroporphyrin III C-Methyl Transferase From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl501

b:32.1
occ:1.00
O A:HOH608 2.8 27.9 1.0
OG1 A:THR114 2.9 26.9 1.0
N A:ASP86 3.4 24.6 1.0
N A:SER115 3.5 24.7 1.0
CG2 A:VAL89 3.7 29.8 1.0
CB A:THR114 3.7 31.1 1.0
O A:HOH635 3.8 39.8 1.0
O A:ASP86 3.8 28.4 1.0
CA A:GLY85 3.8 25.4 1.0
CA A:THR114 3.8 28.0 1.0
O A:VAL89 3.9 25.3 1.0
C A:GLY85 4.1 28.1 1.0
O A:GLY84 4.1 25.7 1.0
OG A:SER115 4.2 37.7 1.0
C A:THR114 4.2 29.3 1.0
CB A:SER115 4.3 33.4 1.0
CA A:ASP86 4.3 23.4 1.0
CB A:ASP86 4.4 24.7 1.0
C A:ASP86 4.5 26.6 1.0
CA A:SER115 4.5 29.6 1.0
N A:GLY85 4.7 24.3 1.0
CD1 A:LEU159 4.7 34.0 1.0
C A:GLY84 4.7 27.2 1.0
C A:VAL89 4.8 25.4 1.0
CD2 A:PHE90 4.9 32.2 1.0
CB A:VAL89 4.9 33.4 1.0

Chlorine binding site 2 out of 3 in 1va0

Go back to Chlorine Binding Sites List in 1va0
Chlorine binding site 2 out of 3 in the Crystal Structure of the Native Form of Uroporphyrin III C-Methyl Transferase From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Native Form of Uroporphyrin III C-Methyl Transferase From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl502

b:45.0
occ:1.00
OG1 B:THR114 2.9 28.7 1.0
N B:ASP86 3.3 22.7 1.0
O B:ASP86 3.7 27.0 1.0
CA B:GLY85 3.7 25.7 1.0
CB B:THR114 3.7 30.7 1.0
N B:SER115 3.8 23.9 1.0
CG2 B:VAL89 3.8 28.3 1.0
CA B:THR114 3.8 26.3 1.0
O B:VAL89 3.9 27.8 1.0
C B:GLY85 4.0 27.6 1.0
O B:GLY84 4.0 25.8 1.0
OG B:SER115 4.3 39.5 1.0
CA B:ASP86 4.3 25.1 1.0
C B:THR114 4.4 27.4 1.0
C B:ASP86 4.4 27.0 1.0
CB B:ASP86 4.6 24.4 1.0
O B:HOH652 4.6 44.8 1.0
N B:GLY85 4.6 29.4 1.0
C B:GLY84 4.6 29.5 1.0
CB B:SER115 4.8 35.1 1.0
C B:VAL89 4.9 24.1 1.0
CA B:SER115 4.9 26.7 1.0
CD1 B:LEU159 5.0 29.3 1.0

Chlorine binding site 3 out of 3 in 1va0

Go back to Chlorine Binding Sites List in 1va0
Chlorine binding site 3 out of 3 in the Crystal Structure of the Native Form of Uroporphyrin III C-Methyl Transferase From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Native Form of Uroporphyrin III C-Methyl Transferase From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl503

b:81.7
occ:1.00
O B:GLY207 3.4 34.6 1.0
O B:HOH626 4.0 35.7 1.0
O B:VAL209 4.2 32.2 1.0
C B:VAL209 4.3 32.5 1.0
C B:LYS208 4.4 43.5 1.0
O B:HOH713 4.4 55.7 1.0
O B:LYS208 4.4 40.9 1.0
C B:GLY207 4.4 32.0 1.0
N B:GLU210 4.4 27.2 1.0
CA B:GLU210 4.5 26.9 1.0
N B:VAL209 4.6 35.0 1.0
NH2 B:ARG165 4.6 30.3 1.0
CB B:GLU210 4.7 29.9 1.0
CA B:LYS208 4.7 34.3 1.0
CA B:VAL209 4.9 32.1 1.0
N B:LYS208 5.0 32.3 1.0

Reference:

P.H.Rehse, T.Kitao, T.H.Tahirov. Structure of A Closed-Form Uroporphyrinogen-III C-Methyltransferase From Thermus Thermophilus. Acta Crystallogr.,Sect.D V. 61 913 2005.
ISSN: ISSN 0907-4449
PubMed: 15983414
DOI: 10.1107/S0907444905008838
Page generated: Sat Dec 12 08:51:39 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy