Chlorine in PDB 1vau: Xenon Derivative of Hen Egg-White Lysozyme

All present enzymatic activity of Xenon Derivative of Hen Egg-White Lysozyme:
3.2.1.17;

The structure of Xenon Derivative of Hen Egg-White Lysozyme, PDB code: 1vau was solved by K.Takeda, H.Miyatake, S.Y.Park, M.Kawamoto, N.Kamiya, K.Miki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.00 / 1.50
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	78.330, 78.330, 36.940, 90.00, 90.00, 90.00
R / Rfree (%)	18.7 / 20.3

The structure of Xenon Derivative of Hen Egg-White Lysozyme also contains other interesting chemical elements:

Xenon	(Xe)	3 atoms
Sodium	(Na)	1 atom

The binding sites of Chlorine atom in the Xenon Derivative of Hen Egg-White Lysozyme (pdb code 1vau). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Xenon Derivative of Hen Egg-White Lysozyme, PDB code: 1vau:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Xenon Derivative of Hen Egg-White Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Xenon Derivative of Hen Egg-White Lysozyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl301 b:13.7 occ:1.00 OH A:TYR23 3.0 9.7 1.0 O A:HOH308 3.3 12.4 1.0 O A:HOH380 3.4 30.5 1.0 CZ A:TYR23 3.7 8.3 1.0 CE2 A:TYR23 3.8 9.0 1.0 CA A:GLY104 4.1 10.9 1.0 O A:ARG21 4.5 11.4 1.0 N A:GLY104 4.7 11.6 1.0 O A:HOH412 4.8 36.0 1.0 CE1 A:TYR23 4.9 8.9 1.0 CD2 A:TYR23 5.0 8.6 1.0

Chlorine binding site 2 out of 2 in the Xenon Derivative of Hen Egg-White Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Xenon Derivative of Hen Egg-White Lysozyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl302 b:16.7 occ:1.00 O A:HOH416 3.1 22.7 1.0 O A:HOH315 3.2 11.7 1.0 N A:THR69 3.2 12.4 1.0 O A:THR69 3.4 13.4 1.0 C A:GLY67 3.5 11.5 1.0 N A:ARG68 3.5 11.7 1.0 CA A:GLY67 3.6 11.1 1.0 ND2 A:ASN65 3.6 10.2 1.0 OG A:SER72 3.7 14.3 1.0 C A:THR69 3.7 13.2 1.0 N A:GLY67 3.7 10.7 1.0 CA A:THR69 3.9 12.7 1.0 O A:HOH319 4.0 14.9 1.0 O A:GLY67 4.1 11.6 1.0 CB A:THR69 4.2 11.9 1.0 C A:ARG68 4.2 12.3 1.0 OD1 A:ASP66 4.2 9.9 1.0 CA A:ARG68 4.3 12.1 1.0 N A:PRO70 4.5 13.7 1.0 NA A:NA303 4.7 11.8 1.0 OG1 A:THR69 4.8 10.5 1.0 C A:ASP66 4.8 10.5 1.0 N A:ASP66 4.9 10.0 1.0 O A:HOH427 4.9 15.9 0.5 CB A:SER72 4.9 15.0 1.0 CG A:ASN65 5.0 10.9 1.0

K.Takeda, H.Miyatake, S.Y.Park, M.Kawamoto, N.Kamiya, K.Miki. Multi-Wavelength Anomalous Diffraction Method For I and Xe Atoms Using Ultra-High-Energy X-Rays From Spring-8 J.Appl.Crystallogr. V. 37 925 2004.
ISSN: ISSN 0021-8898