Atomistry » Chlorine » PDB 1v8f-1vq0 » 1vau
Atomistry »
  Chlorine »
    PDB 1v8f-1vq0 »
      1vau »

Chlorine in PDB 1vau: Xenon Derivative of Hen Egg-White Lysozyme

Enzymatic activity of Xenon Derivative of Hen Egg-White Lysozyme

All present enzymatic activity of Xenon Derivative of Hen Egg-White Lysozyme:
3.2.1.17;

Protein crystallography data

The structure of Xenon Derivative of Hen Egg-White Lysozyme, PDB code: 1vau was solved by K.Takeda, H.Miyatake, S.Y.Park, M.Kawamoto, N.Kamiya, K.Miki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.50
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.330, 78.330, 36.940, 90.00, 90.00, 90.00
R / Rfree (%) 18.7 / 20.3

Other elements in 1vau:

The structure of Xenon Derivative of Hen Egg-White Lysozyme also contains other interesting chemical elements:

Xenon (Xe) 3 atoms
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Xenon Derivative of Hen Egg-White Lysozyme (pdb code 1vau). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Xenon Derivative of Hen Egg-White Lysozyme, PDB code: 1vau:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1vau

Go back to Chlorine Binding Sites List in 1vau
Chlorine binding site 1 out of 2 in the Xenon Derivative of Hen Egg-White Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Xenon Derivative of Hen Egg-White Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:13.7
occ:1.00
OH A:TYR23 3.0 9.7 1.0
O A:HOH308 3.3 12.4 1.0
O A:HOH380 3.4 30.5 1.0
CZ A:TYR23 3.7 8.3 1.0
CE2 A:TYR23 3.8 9.0 1.0
CA A:GLY104 4.1 10.9 1.0
O A:ARG21 4.5 11.4 1.0
N A:GLY104 4.7 11.6 1.0
O A:HOH412 4.8 36.0 1.0
CE1 A:TYR23 4.9 8.9 1.0
CD2 A:TYR23 5.0 8.6 1.0

Chlorine binding site 2 out of 2 in 1vau

Go back to Chlorine Binding Sites List in 1vau
Chlorine binding site 2 out of 2 in the Xenon Derivative of Hen Egg-White Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Xenon Derivative of Hen Egg-White Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:16.7
occ:1.00
O A:HOH416 3.1 22.7 1.0
O A:HOH315 3.2 11.7 1.0
N A:THR69 3.2 12.4 1.0
O A:THR69 3.4 13.4 1.0
C A:GLY67 3.5 11.5 1.0
N A:ARG68 3.5 11.7 1.0
CA A:GLY67 3.6 11.1 1.0
ND2 A:ASN65 3.6 10.2 1.0
OG A:SER72 3.7 14.3 1.0
C A:THR69 3.7 13.2 1.0
N A:GLY67 3.7 10.7 1.0
CA A:THR69 3.9 12.7 1.0
O A:HOH319 4.0 14.9 1.0
O A:GLY67 4.1 11.6 1.0
CB A:THR69 4.2 11.9 1.0
C A:ARG68 4.2 12.3 1.0
OD1 A:ASP66 4.2 9.9 1.0
CA A:ARG68 4.3 12.1 1.0
N A:PRO70 4.5 13.7 1.0
NA A:NA303 4.7 11.8 1.0
OG1 A:THR69 4.8 10.5 1.0
C A:ASP66 4.8 10.5 1.0
N A:ASP66 4.9 10.0 1.0
O A:HOH427 4.9 15.9 0.5
CB A:SER72 4.9 15.0 1.0
CG A:ASN65 5.0 10.9 1.0

Reference:

K.Takeda, H.Miyatake, S.Y.Park, M.Kawamoto, N.Kamiya, K.Miki. Multi-Wavelength Anomalous Diffraction Method For I and Xe Atoms Using Ultra-High-Energy X-Rays From Spring-8 J.Appl.Crystallogr. V. 37 925 2004.
ISSN: ISSN 0021-8898
Page generated: Sat Dec 12 08:51:41 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy