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Chlorine in PDB 1vau: Xenon Derivative of Hen Egg-White Lysozyme

Enzymatic activity of Xenon Derivative of Hen Egg-White Lysozyme

All present enzymatic activity of Xenon Derivative of Hen Egg-White Lysozyme:
3.2.1.17;

Protein crystallography data

The structure of Xenon Derivative of Hen Egg-White Lysozyme, PDB code: 1vau was solved by K.Takeda, H.Miyatake, S.Y.Park, M.Kawamoto, N.Kamiya, K.Miki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.50
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.330, 78.330, 36.940, 90.00, 90.00, 90.00
R / Rfree (%) 18.7 / 20.3

Other elements in 1vau:

The structure of Xenon Derivative of Hen Egg-White Lysozyme also contains other interesting chemical elements:

Xenon (Xe) 3 atoms
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Xenon Derivative of Hen Egg-White Lysozyme (pdb code 1vau). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Xenon Derivative of Hen Egg-White Lysozyme, PDB code: 1vau:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 1vau

Go back to Chlorine Binding Sites List in 1vau
Chlorine binding site 1 out of 2 in the Xenon Derivative of Hen Egg-White Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Xenon Derivative of Hen Egg-White Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:13.7
occ:1.00
OH A:TYR23 3.0 9.7 1.0
O A:HOH308 3.3 12.4 1.0
O A:HOH380 3.4 30.5 1.0
CZ A:TYR23 3.7 8.3 1.0
CE2 A:TYR23 3.8 9.0 1.0
CA A:GLY104 4.1 10.9 1.0
O A:ARG21 4.5 11.4 1.0
N A:GLY104 4.7 11.6 1.0
O A:HOH412 4.8 36.0 1.0
CE1 A:TYR23 4.9 8.9 1.0
CD2 A:TYR23 5.0 8.6 1.0

Chlorine binding site 2 out of 2 in 1vau

Go back to Chlorine Binding Sites List in 1vau
Chlorine binding site 2 out of 2 in the Xenon Derivative of Hen Egg-White Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Xenon Derivative of Hen Egg-White Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:16.7
occ:1.00
O A:HOH416 3.1 22.7 1.0
O A:HOH315 3.2 11.7 1.0
N A:THR69 3.2 12.4 1.0
O A:THR69 3.4 13.4 1.0
C A:GLY67 3.5 11.5 1.0
N A:ARG68 3.5 11.7 1.0
CA A:GLY67 3.6 11.1 1.0
ND2 A:ASN65 3.6 10.2 1.0
OG A:SER72 3.7 14.3 1.0
C A:THR69 3.7 13.2 1.0
N A:GLY67 3.7 10.7 1.0
CA A:THR69 3.9 12.7 1.0
O A:HOH319 4.0 14.9 1.0
O A:GLY67 4.1 11.6 1.0
CB A:THR69 4.2 11.9 1.0
C A:ARG68 4.2 12.3 1.0
OD1 A:ASP66 4.2 9.9 1.0
CA A:ARG68 4.3 12.1 1.0
N A:PRO70 4.5 13.7 1.0
NA A:NA303 4.7 11.8 1.0
OG1 A:THR69 4.8 10.5 1.0
C A:ASP66 4.8 10.5 1.0
N A:ASP66 4.9 10.0 1.0
O A:HOH427 4.9 15.9 0.5
CB A:SER72 4.9 15.0 1.0
CG A:ASN65 5.0 10.9 1.0

Reference:

K.Takeda, H.Miyatake, S.Y.Park, M.Kawamoto, N.Kamiya, K.Miki. Multi-Wavelength Anomalous Diffraction Method For I and Xe Atoms Using Ultra-High-Energy X-Rays From Spring-8 J.Appl.Crystallogr. V. 37 925 2004.
ISSN: ISSN 0021-8898
Page generated: Sat Dec 12 08:51:41 2020

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